Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IGKV3-31-201ENST00000523109 329 ntBASIC3.96□□□□□ -1.78
MSH6P52701 PDCL2P2-201ENST00000533651 189 ntBASIC3.96□□□□□ -1.78
MSH6P52701 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH6P52701 AC017076.1-201ENST00000607613 578 ntBASIC3.96□□□□□ -1.78
MSH6P52701 AC009159.1-201ENST00000618386 642 ntBASIC3.96□□□□□ -1.78
MSH6P52701 AP006248.2-201ENST00000623309 592 ntBASIC3.96□□□□□ -1.78
MSH6P52701 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH6P52701 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH6P52701 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH6P52701 ELL2P4-201ENST00000446870 1376 ntBASIC3.96□□□□□ -1.78
MSH6P52701 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH6P52701 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
MSH6P52701 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.95□□□□□ -1.78
MSH6P52701 AC010329.2-201ENST00000595195 2737 ntBASIC3.95□□□□□ -1.78
MSH6P52701 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
MSH6P52701 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
MSH6P52701 MIR421-201ENST00000365696 85 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 AL049610.1-201ENST00000423374 372 ntBASIC3.95□□□□□ -1.78
MSH6P52701 HMGB3P12-201ENST00000438745 556 ntBASIC3.95□□□□□ -1.78
MSH6P52701 RSL24D1P2-201ENST00000445584 366 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH6P52701 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
MSH6P52701 AC117522.3-201ENST00000507974 584 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.95□□□□□ -1.78
MSH6P52701 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH6P52701 OR4V1P-201ENST00000525394 1140 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AC074029.2-201ENST00000551045 634 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.95□□□□□ -1.78
MSH6P52701 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 AC073111.2-201ENST00000605657 1075 ntBASIC3.95□□□□□ -1.78
MSH6P52701 AC009032.1-201ENST00000617574 431 ntBASIC3.95□□□□□ -1.78
MSH6P52701 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
MSH6P52701 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
MSH6P52701 MTND5P24-201ENST00000438892 1767 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AC004972.1-201ENST00000623934 2209 ntBASIC3.94□□□□□ -1.78
MSH6P52701 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH6P52701 AL139039.1-201ENST00000401900 692 ntBASIC3.94□□□□□ -1.78
MSH6P52701 GSTA12P-201ENST00000402398 508 ntBASIC3.94□□□□□ -1.78
MSH6P52701 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH6P52701 RNA5SP107-201ENST00000411358 122 ntBASIC3.94□□□□□ -1.78
MSH6P52701 SEC63P1-201ENST00000425785 1258 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH6P52701 CASP3P1-201ENST00000446037 609 ntBASIC3.94□□□□□ -1.78
MSH6P52701 IFNA11P-201ENST00000446352 526 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AL627224.1-201ENST00000448334 444 ntBASIC3.94□□□□□ -1.78
MSH6P52701 RN7SL442P-201ENST00000473804 320 ntBASIC3.94□□□□□ -1.78
MSH6P52701 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
MSH6P52701 AC021087.2-201ENST00000504656 1203 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AC021146.7-201ENST00000509604 775 ntBASIC3.94□□□□□ -1.78
MSH6P52701 RNA5SP217-201ENST00000515959 91 ntBASIC3.94□□□□□ -1.78
MSH6P52701 RN7SKP244-201ENST00000516513 307 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH6P52701 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH6P52701 MIR3186-201ENST00000577404 85 ntBASIC3.94□□□□□ -1.78
MSH6P52701 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH6P52701 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH6P52701 AP004372.1-201ENST00000604842 844 ntBASIC3.94□□□□□ -1.78
MSH6P52701 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH6P52701 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSH6P52701 AL592437.2-201ENST00000421655 2434 ntBASIC3.94□□□□□ -1.78
MSH6P52701 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH6P52701 AC006960.1-201ENST00000419980 153 ntBASIC3.93□□□□□ -1.78
MSH6P52701 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.93□□□□□ -1.78
MSH6P52701 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH6P52701 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH6P52701 AL353898.1-201ENST00000444055 238 ntBASIC3.93□□□□□ -1.78
MSH6P52701 ST13P14-201ENST00000474095 734 ntBASIC3.93□□□□□ -1.78
MSH6P52701 AC068305.1-201ENST00000497406 726 ntBASIC3.93□□□□□ -1.78
MSH6P52701 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH6P52701 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH6P52701 AC011492.1-201ENST00000600023 315 ntBASIC3.93□□□□□ -1.78
MSH6P52701 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH6P52701 AC022509.4-201ENST00000621404 572 ntBASIC3.93□□□□□ -1.78
MSH6P52701 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH6P52701 AC145207.9-201ENST00000623802 325 ntBASIC3.93□□□□□ -1.78
MSH6P52701 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH6P52701 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH6P52701 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH6P52701 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH6P52701 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
MSH6P52701 MIR592-201ENST00000384959 97 ntBASIC3.92□□□□□ -1.78
MSH6P52701 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH6P52701 AC078785.3-201ENST00000476607 425 ntBASIC3.92□□□□□ -1.78
MSH6P52701 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH6P52701 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH6P52701 ACTR6P1-201ENST00000514311 1104 ntBASIC3.92□□□□□ -1.78
MSH6P52701 SNORA64.4-201ENST00000516632 81 ntBASIC3.92□□□□□ -1.78
MSH6P52701 SNORA31.21-201ENST00000517180 77 ntBASIC3.92□□□□□ -1.78
MSH6P52701 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH6P52701 AP003122.3-201ENST00000526316 255 ntBASIC3.92□□□□□ -1.78
MSH6P52701 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
MSH6P52701 DEFB122-202ENST00000569013 197 ntBASIC3.92□□□□□ -1.78
MSH6P52701 AP006437.1-201ENST00000641440 3685 ntBASIC3.92□□□□□ -1.78
MSH6P52701 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms