Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXA9P31269 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA9P31269 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA9P31269 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HOXA9P31269 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA9P31269 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA9P31269 OR5H2-201ENST00000355273 945 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HOXA9P31269 SNORA7.2-201ENST00000364446 145 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA9P31269 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA9P31269 Y_RNA.500-201ENST00000384466 111 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 PTGES3P2-201ENST00000407942 482 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 RPL23AP47-201ENST00000408017 460 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA9P31269 RNU6-55P-201ENST00000411092 107 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 RNU6-954P-201ENST00000411355 107 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AC105402.1-201ENST00000413336 545 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA9P31269 MED6P1-201ENST00000439659 713 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 RPL23AP33-201ENST00000442301 452 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA9P31269 AC010401.1-201ENST00000463867 348 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA9P31269 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA9P31269 RNU6-467P-201ENST00000517027 110 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.36□□□□□ -1.87
HOXA9P31269 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA9P31269 AC022080.3-201ENST00000544433 482 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 SYF2P1-201ENST00000550658 413 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA9P31269 AL049870.4-201ENST00000555741 486 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AC025918.2-201ENST00000558683 763 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 H3F3AP1-201ENST00000559984 334 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA9P31269 MIR548Y-201ENST00000582739 110 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA9P31269 MIR6852-201ENST00000621699 66 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AC006386.2-201ENST00000624491 75 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AC012005.1-201ENST00000624575 75 ntBASIC3.36□□□□□ -1.87
HOXA9P31269 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA9P31269 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA9P31269 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA9P31269 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 ZNF90P1-201ENST00000480493 1951 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RNU6-600P-201ENST00000362524 99 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RNU6-792P-201ENST00000363490 107 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RNU6-7-201ENST00000364784 107 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RNU6-8-201ENST00000365467 107 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RNU6-650P-201ENST00000365658 111 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AL356968.1-201ENST00000416622 474 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AL513174.1-201ENST00000423182 629 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA9P31269 RPL12P26-201ENST00000452430 487 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 VN1R17P-201ENST00000472048 1090 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 AC021205.2-201ENST00000480069 347 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AC096576.1-201ENST00000489014 359 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AC005351.1-201ENST00000511152 786 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 AC008885.1-201ENST00000514930 301 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 SNORA76.2-201ENST00000517095 137 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AP001636.2-201ENST00000525517 696 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 AC024224.1-201ENST00000538284 609 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AL163153.1-201ENST00000554223 283 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 AC005776.1-201ENST00000603164 290 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 AC106730.3-201ENST00000624568 641 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AC097372.4-201ENST00000625025 466 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA9P31269 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 AL672296.1-201ENST00000427780 2158 ntBASIC3.35□□□□□ -1.87
HOXA9P31269 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA9P31269 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA9P31269 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA9P31269 OR1S2-201ENST00000302592 978 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 RNA5SP391-201ENST00000363456 119 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA9P31269 RPL5P18-201ENST00000406671 891 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA9P31269 RPL35AP12-201ENST00000425362 338 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA9P31269 BX679664.1-201ENST00000434429 253 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 RNFT1P2-201ENST00000443064 757 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA9P31269 HMGB1P26-201ENST00000452520 628 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 RPL23AP23-201ENST00000452590 471 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AL049829.1-201ENST00000465411 156 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 RPL23AP14-201ENST00000468281 468 ntBASIC3.34□□□□□ -1.87
HOXA9P31269 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms