Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 CYCSP24-201ENST00000445119 316 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 DHFRP3-201ENST00000455595 559 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 SNRPFP4-201ENST00000456366 242 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 SRRM1P2-201ENST00000464531 1192 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 RPS15AP17-201ENST00000470598 390 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 FTH1P24-201ENST00000503502 462 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC021678.1-201ENST00000505195 936 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC093809.1-201ENST00000509155 340 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC008958.1-201ENST00000511047 682 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 IFITM8P-201ENST00000522529 394 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC141257.3-201ENST00000572906 215 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 MIR4504-201ENST00000577413 92 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC022884.2-201ENST00000578535 580 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AL021997.1-201ENST00000605757 193 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AC073968.1-201ENST00000618594 637 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 AL450345.1-202ENST00000605741 3881 ntBASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SMC1BQ8NDV3 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC008033.1-201ENST00000216407 1162 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 MIR331-201ENST00000362302 94 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 RNU5F-6P-201ENST00000362979 116 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 HMGB1P17-201ENST00000403495 628 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 MTCYBP36-201ENST00000404146 440 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 U3.32-201ENST00000408116 212 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 ELOCP17-201ENST00000414751 326 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 MTND1P28-201ENST00000435623 950 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 MTND1P27-201ENST00000451117 902 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 FTH1P21-201ENST00000512179 511 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC025881.1-201ENST00000518851 512 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AP002453.2-201ENST00000533503 320 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC245505.1-201ENST00000556398 224 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AGGF1P8-201ENST00000562979 1000 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 EIF1P4-201ENST00000572664 335 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 RLIMP1-201ENST00000339626 1680 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AL022393.1-201ENST00000625142 1677 ntBASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SMC1BQ8NDV3 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 SNORA73.2-201ENST00000364946 201 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 ZNF603P-201ENST00000405613 487 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 RN7SKP247-201ENST00000411094 308 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 AC007738.1-201ENST00000413892 348 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 RPS3AP9-201ENST00000417027 792 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 RPS26P47-201ENST00000427219 348 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 Z74696.2-201ENST00000436514 498 ntBASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.35□□□□□ -1.55
SMC1BQ8NDV3 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms