Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AP000936.3-201ENST00000438127 255 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AC004801.2-202ENST00000463559 283 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HSPG2P98160 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC022069.1-201ENST00000582910 658 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC087565.3-202ENST00000642085 1603 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.61□□□□□ -2.15
HSPG2P98160 LAP3P1-201ENST00000403648 294 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AC017078.1-201ENST00000416146 368 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC1.61□□□□□ -2.15
HSPG2P98160 MTCO3P11-201ENST00000455103 774 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC010198.2-201ENST00000550612 259 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC007621.1-201ENST00000604544 437 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AL359821.1-201ENST00000605519 182 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AL356490.1-201ENST00000623079 479 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC092593.1-201ENST00000515413 1815 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC1.61□□□□□ -2.15
HSPG2P98160 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
HSPG2P98160 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HSPG2P98160 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.61□□□□□ -2.15
HSPG2P98160 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC1.61□□□□□ -2.15
HSPG2P98160 AL391156.1-201ENST00000554965 554 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 AC009318.2-201ENST00000610917 651 ntBASIC1.61□□□□□ -2.15
HSPG2P98160 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 GTF2H2B-203ENST00000508065 1432 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
HSPG2P98160 MIR708-201ENST00000390708 88 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 RPL23AP48-201ENST00000406913 488 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 OR6K1P-201ENST00000456766 971 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC1.6□□□□□ -2.15
HSPG2P98160 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HSPG2P98160 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HSPG2P98160 RPL21P75-201ENST00000396599 483 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 RPL21P1-201ENST00000399532 476 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 RPL21P28-201ENST00000401418 483 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AL592114.1-201ENST00000403842 483 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 MORF4L1P6-201ENST00000418771 268 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AL121882.1-201ENST00000422893 417 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 RPL21P16-201ENST00000495531 483 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 AP005136.1-201ENST00000579765 429 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AC023813.4-201ENST00000607580 580 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AC099654.11-201ENST00000638857 294 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 BX005019.1-201ENST00000561881 1810 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
HSPG2P98160 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
HSPG2P98160 RN7SKP44-201ENST00000363602 316 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AL023284.1-201ENST00000403956 276 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 AL590639.1-201ENST00000456484 337 ntBASIC1.6□□□□□ -2.15
HSPG2P98160 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC1.6□□□□□ -2.15
HSPG2P98160 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC1.6□□□□□ -2.15
HSPG2P98160 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HSPG2P98160 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC1.6□□□□□ -2.15
HSPG2P98160 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
HSPG2P98160 AC005539.1-201ENST00000443768 1479 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.15
HSPG2P98160 USP44-208ENST00000552440 1818 ntTSL 5 BASIC1.59□□□□□ -2.15
HSPG2P98160 RNU6-253P-201ENST00000384730 105 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 RPS7P13-201ENST00000413955 498 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.59□□□□□ -2.15
HSPG2P98160 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.59□□□□□ -2.15
HSPG2P98160 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC034244.2-201ENST00000514668 858 ntBASIC1.59□□□□□ -2.15
HSPG2P98160 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC1.59□□□□□ -2.15
HSPG2P98160 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC1.59□□□□□ -2.15
HSPG2P98160 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.59□□□□□ -2.15
HSPG2P98160 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
HSPG2P98160 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC1.59□□□□□ -2.15
HSPG2P98160 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
HSPG2P98160 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms