Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC022784.5-201ENST00000522241 437 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.36□□□□□ -1.87
SCN4AP35499 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.36□□□□□ -1.87
SCN4AP35499 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.36□□□□□ -1.87
SCN4AP35499 AC009159.1-201ENST00000618386 642 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.36□□□□□ -1.87
SCN4AP35499 ATP5F1P6-201ENST00000402768 767 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 BX276092.3-201ENST00000424182 230 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 MTCO1P51-201ENST00000427672 1060 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.35□□□□□ -1.87
SCN4AP35499 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.35□□□□□ -1.87
SCN4AP35499 RPL23AP62-201ENST00000463396 453 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AP001025.2-201ENST00000490908 477 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 RPS29P21-201ENST00000496272 170 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC091917.2-201ENST00000505002 744 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 AC009977.1-201ENST00000586015 570 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC025754.2-201ENST00000606491 432 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AL450489.1-201ENST00000612071 468 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC241585.2-209ENST00000638217 143 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC119674.1-220ENST00000641502 1048 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 AL450326.2-201ENST00000421913 1962 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 RPL21P3-201ENST00000395517 478 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 SNORA79B-201ENST00000410557 148 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AL034379.1-201ENST00000423216 253 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 RAB9AP5-201ENST00000437794 597 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 SNRPFP2-201ENST00000440710 251 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 RAB9AP2-201ENST00000443911 597 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC146507.2-201ENST00000460608 476 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 SNORA48.9-201ENST00000516419 162 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.35□□□□□ -1.87
SCN4AP35499 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.35□□□□□ -1.87
SCN4AP35499 AL365400.2-201ENST00000605604 902 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AL592494.3-201ENST00000609485 464 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 AC025034.2-201ENST00000623264 286 ntBASIC3.35□□□□□ -1.87
SCN4AP35499 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SCN4AP35499 OR10AB1P-202ENST00000641219 1686 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.34□□□□□ -1.87
SCN4AP35499 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.34□□□□□ -1.87
SCN4AP35499 AC098592.2-201ENST00000413158 265 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 AC234781.4-201ENST00000419384 244 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 RAD1P2-201ENST00000446414 663 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 RPL29P29-201ENST00000448725 423 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.34□□□□□ -1.87
SCN4AP35499 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.34□□□□□ -1.87
SCN4AP35499 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.34□□□□□ -1.87
SCN4AP35499 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.34□□□□□ -1.87
SCN4AP35499 DNAJC19P3-201ENST00000594491 331 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 AP003499.2-201ENST00000624100 483 ntBASIC3.34□□□□□ -1.87
SCN4AP35499 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC3.34□□□□□ -1.87
SCN4AP35499 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SCN4AP35499 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
SCN4AP35499 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SCN4AP35499 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SCN4AP35499 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SCN4AP35499 MIR137-201ENST00000385223 102 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SCN4AP35499 AL139415.2-201ENST00000431968 163 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 MTCO1P57-201ENST00000432182 261 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SCN4AP35499 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3.33□□□□□ -1.88
SCN4AP35499 AC096725.1-201ENST00000514266 313 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 MIR2276-201ENST00000516886 89 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.33□□□□□ -1.88
SCN4AP35499 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.33□□□□□ -1.88
SCN4AP35499 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SCN4AP35499 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SCN4AP35499 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.33□□□□□ -1.88
SCN4AP35499 MIR4648-201ENST00000580107 72 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 FAM60CP-201ENST00000591086 664 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC067852.7-201ENST00000623270 535 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.33□□□□□ -1.88
SCN4AP35499 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.33□□□□□ -1.88
SCN4AP35499 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 RPS4XP7-201ENST00000406274 780 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.33□□□□□ -1.88
SCN4AP35499 SEPT7P6-201ENST00000469999 1143 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.33□□□□□ -1.88
SCN4AP35499 RNA5SP282-201ENST00000516355 108 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 RN7SKP244-201ENST00000516513 307 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.33□□□□□ -1.88
SCN4AP35499 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms