Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC000367.1-201ENST00000452711 1766 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXC9P31274 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC9P31274 RNU6-636P-201ENST00000384598 107 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 RNU6-146P-201ENST00000384602 108 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 MIR513B-201ENST00000385136 84 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 UBA52P6-201ENST00000399822 382 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 RNU4-47P-201ENST00000410876 114 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 RNU6-575P-201ENST00000411326 105 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC9P31274 ATP5C1P1-201ENST00000441945 895 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXC9P31274 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 RPS3AP50-201ENST00000487064 803 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC020893.1-201ENST00000502452 580 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC9P31274 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC9P31274 RN7SKP287-201ENST00000516546 266 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 IGHV3-32-201ENST00000519182 355 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC9P31274 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC9P31274 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 EIF4BP1-201ENST00000554881 351 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXC9P31274 AC015688.2-201ENST00000584523 262 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 VN1R83P-201ENST00000595685 445 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC022022.2-201ENST00000602989 360 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AL035411.2-201ENST00000604022 421 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AP005137.2-201ENST00000609238 400 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AC079395.3-201ENST00000615161 484 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 AL158163.2-201ENST00000619110 700 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXC9P31274 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXC9P31274 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
HOXC9P31274 CR383658.2-201ENST00000547576 1525 ntBASIC4.46□□□□□ -1.7
HOXC9P31274 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXC9P31274 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC9P31274 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC9P31274 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC9P31274 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXC9P31274 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
HOXC9P31274 RNA5SP235-201ENST00000365411 114 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC9P31274 MTCO2P31-201ENST00000402702 684 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AL079342.2-201ENST00000403367 482 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 SFR1P1-201ENST00000403720 688 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AL136310.1-201ENST00000404926 654 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC004552.1-201ENST00000419089 348 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC9P31274 MTATP6P17-201ENST00000431030 672 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC9P31274 CR769776.1-201ENST00000441254 787 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 RSL24D1P3-201ENST00000449255 495 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AL139824.2-201ENST00000458731 1095 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC9P31274 RPS3AP43-201ENST00000479743 781 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC090543.2-201ENST00000483963 348 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC021146.5-201ENST00000503544 545 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC098862.1-201ENST00000504991 413 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC118282.2-201ENST00000508739 374 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC9P31274 PTGES3P3-201ENST00000511479 482 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 APOOP4-201ENST00000513530 597 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 RNA5SP341-201ENST00000516261 117 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXC9P31274 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC9P31274 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXC9P31274 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXC9P31274 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 AC113368.1-201ENST00000603736 382 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC9P31274 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 OR1S1-201ENST00000624470 978 ntBASIC4.45□□□□□ -1.7
HOXC9P31274 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.45□□□□□ -1.7
HOXC9P31274 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC9P31274 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC9P31274 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 AC114546.3-201ENST00000623582 1734 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXC9P31274 AC025263.3-201ENST00000622965 1396 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 RNU1-70P-201ENST00000362618 164 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms