Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.25□□□□□ -1.57
HMGB1P09429 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGB1P09429 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGB1P09429 RNU6-777P-201ENST00000364265 104 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HMGB1P09429 RPS3AP23-201ENST00000401762 784 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 MIR320C1-201ENST00000408566 88 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 RN7SKP167-201ENST00000411047 285 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 TPT1P2-201ENST00000413105 503 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.25□□□□□ -1.57
HMGB1P09429 AC083875.1-201ENST00000419509 405 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 MTATP6P4-201ENST00000427725 675 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AL132765.1-201ENST00000434165 553 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 HIGD1AP11-201ENST00000438361 280 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AC011753.3-201ENST00000443436 406 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.25□□□□□ -1.57
HMGB1P09429 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.25□□□□□ -1.57
HMGB1P09429 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 MTCO2P15-201ENST00000532655 656 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 CASC16-202ENST00000563844 610 ntTSL 3 BASIC5.25□□□□□ -1.57
HMGB1P09429 AC084783.1-201ENST00000565846 910 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AL353997.4-201ENST00000586196 166 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AL596327.1-201ENST00000603629 213 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AC115286.1-201ENST00000604298 434 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AC100827.5-201ENST00000615883 426 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AL138721.1-201ENST00000616756 179 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 AL136981.2-201ENST00000617319 734 ntBASIC5.25□□□□□ -1.57
HMGB1P09429 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.25□□□□□ -1.57
HMGB1P09429 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGB1P09429 AC011477.1-204ENST00000623416 1325 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 AC021755.1-201ENST00000559747 1447 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AL031985.3-201ENST00000565390 2449 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HMGB1P09429 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.24□□□□□ -1.57
HMGB1P09429 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 DEFB108F-201ENST00000344638 222 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 RPS3AP26-201ENST00000398259 784 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 RPS16P5-201ENST00000406501 404 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.24□□□□□ -1.57
HMGB1P09429 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.24□□□□□ -1.57
HMGB1P09429 AL008987.1-201ENST00000415528 237 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 HMGB1P49-201ENST00000418882 569 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 RPL23AP35-201ENST00000451906 501 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.24□□□□□ -1.57
HMGB1P09429 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.24□□□□□ -1.57
HMGB1P09429 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.24□□□□□ -1.57
HMGB1P09429 RPS27AP17-201ENST00000463344 455 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AC010469.1-201ENST00000463864 576 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 HMGN2P13-201ENST00000476476 274 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 RPL31P60-201ENST00000478450 367 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 AL359273.1-201ENST00000510918 627 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.24□□□□□ -1.57
HMGB1P09429 DEFB108D-201ENST00000527787 222 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 AC034268.2-201ENST00000571784 482 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AL121834.1-201ENST00000572284 509 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.24□□□□□ -1.57
HMGB1P09429 AC079587.1-201ENST00000603846 277 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AC090186.1-201ENST00000605991 572 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 Z98200.1-201ENST00000607298 470 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.24□□□□□ -1.57
HMGB1P09429 AC020634.1-201ENST00000608701 549 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 AC009570.1-201ENST00000609599 745 ntBASIC5.24□□□□□ -1.57
HMGB1P09429 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.24□□□□□ -1.57
HMGB1P09429 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HMGB1P09429 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
HMGB1P09429 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.23□□□□□ -1.57
HMGB1P09429 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HMGB1P09429 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HMGB1P09429 RNU6-744P-201ENST00000365557 107 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 RNU6-157P-201ENST00000383957 107 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 RNU6-1316P-201ENST00000384242 108 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HMGB1P09429 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HMGB1P09429 RN7SKP216-201ENST00000411050 312 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 Z97055.1-201ENST00000419730 712 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.23□□□□□ -1.57
HMGB1P09429 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.23□□□□□ -1.57
HMGB1P09429 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HMGB1P09429 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.23□□□□□ -1.57
HMGB1P09429 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.23□□□□□ -1.57
HMGB1P09429 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.23□□□□□ -1.57
HMGB1P09429 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.23□□□□□ -1.57
HMGB1P09429 RN7SL354P-201ENST00000469282 294 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.23□□□□□ -1.57
HMGB1P09429 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.23□□□□□ -1.57
HMGB1P09429 AC109464.2-201ENST00000510242 943 ntBASIC5.23□□□□□ -1.57
HMGB1P09429 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms