Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 MIR3687-2-201ENST00000577708 61 ntBASIC17.93■□□□□ 0.46
CHD8Q9HCK8 AC024243.1-201ENST00000609234 778 ntBASIC17.93■□□□□ 0.46
CHD8Q9HCK8 MIR3687-1-201ENST00000614492 61 ntBASIC17.93■□□□□ 0.46
CHD8Q9HCK8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD8Q9HCK8 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD8Q9HCK8 KRT18P28-201ENST00000453838 1332 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 AC005229.4-201ENST00000610085 2198 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 AL591424.1-201ENST00000442569 1213 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 AC004832.2-201ENST00000426397 482 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 AP006288.1-201ENST00000446065 395 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 SPCS2P1-201ENST00000561636 679 ntBASIC17.91■□□□□ 0.46
CHD8Q9HCK8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD8Q9HCK8 HNRNPDP1-201ENST00000439535 754 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 NSUN5P1-202ENST00000421140 1535 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 NSUN5P2-203ENST00000457352 1529 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 ZNF259P1-201ENST00000407656 1365 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 AP005901.3-202ENST00000581653 237 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 AL596442.2-201ENST00000610240 980 ntBASIC17.9■□□□□ 0.46
CHD8Q9HCK8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.9■□□□□ 0.46
CHD8Q9HCK8 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms