Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HIPK3Q9H422 AC026310.3-201ENST00000625186 2373 ntBASIC21.02■□□□□ 0.96
HIPK3Q9H422 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HIPK3Q9H422 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.02■□□□□ 0.96
HIPK3Q9H422 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HIPK3Q9H422 CR769767.2-201ENST00000622735 460 ntBASIC21.02■□□□□ 0.96
HIPK3Q9H422 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HIPK3Q9H422 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HIPK3Q9H422 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HIPK3Q9H422 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HIPK3Q9H422 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.01■□□□□ 0.95
HIPK3Q9H422 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 RASA4DP-201ENST00000460726 1199 ntBASIC21.01■□□□□ 0.95
HIPK3Q9H422 AC092597.1-201ENST00000487352 616 ntBASIC21.01■□□□□ 0.95
HIPK3Q9H422 AC034232.1-201ENST00000506026 1064 ntBASIC21.01■□□□□ 0.95
HIPK3Q9H422 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HIPK3Q9H422 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
HIPK3Q9H422 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21■□□□□ 0.95
HIPK3Q9H422 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21■□□□□ 0.95
HIPK3Q9H422 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21■□□□□ 0.95
HIPK3Q9H422 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
HIPK3Q9H422 AC111152.3-201ENST00000569699 673 ntBASIC21■□□□□ 0.95
HIPK3Q9H422 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HIPK3Q9H422 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HIPK3Q9H422 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HIPK3Q9H422 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 AC004870.1-201ENST00000315132 882 ntBASIC20.99■□□□□ 0.95
HIPK3Q9H422 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 TSSC2-201ENST00000450217 709 ntBASIC20.99■□□□□ 0.95
HIPK3Q9H422 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.99■□□□□ 0.95
HIPK3Q9H422 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HIPK3Q9H422 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIPK3Q9H422 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 AL845331.1-201ENST00000424978 1190 ntBASIC20.98■□□□□ 0.95
HIPK3Q9H422 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 FDX1P1-201ENST00000449115 551 ntBASIC20.98■□□□□ 0.95
HIPK3Q9H422 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.98■□□□□ 0.95
HIPK3Q9H422 AC011498.5-201ENST00000592027 486 ntBASIC20.98■□□□□ 0.95
HIPK3Q9H422 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HIPK3Q9H422 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms