Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 AL023973.1-201ENST00000624619 620 ntBASIC18.73■□□□□ 0.59
LMX1AQ8TE12 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 KRT8P45-201ENST00000414328 1447 ntBASIC18.73■□□□□ 0.59
LMX1AQ8TE12 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 AC104417.2-201ENST00000562989 1793 ntBASIC18.72■□□□□ 0.59
LMX1AQ8TE12 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1AQ8TE12 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 AL157384.1-201ENST00000445995 2473 ntBASIC18.71■□□□□ 0.59
LMX1AQ8TE12 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 AL358472.4-201ENST00000633140 710 ntBASIC18.71■□□□□ 0.59
LMX1AQ8TE12 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 ZNF815P-204ENST00000434898 1737 ntBASIC18.71■□□□□ 0.59
LMX1AQ8TE12 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1AQ8TE12 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 AL031133.1-201ENST00000406807 723 ntBASIC18.7■□□□□ 0.58
LMX1AQ8TE12 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 MYC-208ENST00000641036 567 ntBASIC18.7■□□□□ 0.58
LMX1AQ8TE12 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 AC112907.3-201ENST00000577781 2400 ntBASIC18.7■□□□□ 0.58
LMX1AQ8TE12 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1AQ8TE12 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms