Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC28AQ8IWP9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 FLJ38576-201ENST00000623820 2459 ntBASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 AC126763.1-201ENST00000552015 2118 ntBASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC28AQ8IWP9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 AC092850.2-201ENST00000623821 2697 ntBASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC28AQ8IWP9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 ABALON-201ENST00000629058 1903 ntBASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC28AQ8IWP9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms