Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP54Q70EL1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC25.68■■□□□ 1.7
USP54Q70EL1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 MIR3180-5-201ENST00000583743 153 ntBASIC25.68■■□□□ 1.7
USP54Q70EL1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC25.68■■□□□ 1.7
USP54Q70EL1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 FGF14-AS2-201ENST00000606448 1074 ntBASIC25.68■■□□□ 1.7
USP54Q70EL1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC25.68■■□□□ 1.7
USP54Q70EL1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
USP54Q70EL1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
USP54Q70EL1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC25.68■■□□□ 1.7
USP54Q70EL1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP54Q70EL1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC25.68■■□□□ 1.7
USP54Q70EL1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.67■■□□□ 1.7
USP54Q70EL1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.67■■□□□ 1.7
USP54Q70EL1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC25.67■■□□□ 1.7
USP54Q70EL1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC25.67■■□□□ 1.7
USP54Q70EL1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 AL450487.1-201ENST00000426799 995 ntBASIC25.67■■□□□ 1.7
USP54Q70EL1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC25.67■■□□□ 1.7
USP54Q70EL1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.67■■□□□ 1.7
USP54Q70EL1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC25.67■■□□□ 1.7
USP54Q70EL1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC25.67■■□□□ 1.7
USP54Q70EL1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP54Q70EL1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.66■■□□□ 1.7
USP54Q70EL1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC25.66■■□□□ 1.7
USP54Q70EL1 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC25.66■■□□□ 1.7
USP54Q70EL1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC25.66■■□□□ 1.7
USP54Q70EL1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
USP54Q70EL1 AC012313.10-201ENST00000623509 926 ntBASIC25.66■■□□□ 1.7
USP54Q70EL1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP54Q70EL1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.66■■□□□ 1.7
USP54Q70EL1 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP54Q70EL1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.65■■□□□ 1.7
USP54Q70EL1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
USP54Q70EL1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP54Q70EL1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC25.65■■□□□ 1.7
USP54Q70EL1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC25.65■■□□□ 1.7
USP54Q70EL1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.65■■□□□ 1.7
USP54Q70EL1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
USP54Q70EL1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP54Q70EL1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP54Q70EL1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP54Q70EL1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USP54Q70EL1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP54Q70EL1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC25.64■■□□□ 1.7
USP54Q70EL1 KRT126P-201ENST00000549467 1181 ntBASIC25.64■■□□□ 1.7
USP54Q70EL1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USP54Q70EL1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
USP54Q70EL1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
USP54Q70EL1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.64■■□□□ 1.7
USP54Q70EL1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP54Q70EL1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP54Q70EL1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP54Q70EL1 AC034232.1-201ENST00000506026 1064 ntBASIC25.64■■□□□ 1.69
USP54Q70EL1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC25.64■■□□□ 1.69
USP54Q70EL1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP54Q70EL1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP54Q70EL1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.63■■□□□ 1.69
USP54Q70EL1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP54Q70EL1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC25.63■■□□□ 1.69
USP54Q70EL1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP54Q70EL1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC25.63■■□□□ 1.69
USP54Q70EL1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP54Q70EL1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP54Q70EL1 HLA-F-220ENST00000434407 884 ntBASIC25.63■■□□□ 1.69
USP54Q70EL1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms