Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT39Q6A163 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
KRT39Q6A163 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.78■□□□□ 0.92
KRT39Q6A163 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
KRT39Q6A163 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
KRT39Q6A163 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT39Q6A163 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.77■□□□□ 0.92
KRT39Q6A163 Z85996.1-201ENST00000494644 937 ntBASIC20.77■□□□□ 0.92
KRT39Q6A163 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.77■□□□□ 0.92
KRT39Q6A163 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.77■□□□□ 0.92
KRT39Q6A163 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.77■□□□□ 0.92
KRT39Q6A163 AC073195.1-201ENST00000607241 877 ntBASIC20.77■□□□□ 0.92
KRT39Q6A163 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.77■□□□□ 0.92
KRT39Q6A163 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT39Q6A163 KRT16P1-201ENST00000399124 1418 ntBASIC20.77■□□□□ 0.91
KRT39Q6A163 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
KRT39Q6A163 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.77■□□□□ 0.91
KRT39Q6A163 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
KRT39Q6A163 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
KRT39Q6A163 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.76■□□□□ 0.91
KRT39Q6A163 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.76■□□□□ 0.91
KRT39Q6A163 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 KRT8P41-201ENST00000533985 1514 ntBASIC20.76■□□□□ 0.91
KRT39Q6A163 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
KRT39Q6A163 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT39Q6A163 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT39Q6A163 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT39Q6A163 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
KRT39Q6A163 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.75■□□□□ 0.91
KRT39Q6A163 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT39Q6A163 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT39Q6A163 CR392000.1-201ENST00000624770 1228 ntBASIC20.75■□□□□ 0.91
KRT39Q6A163 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT39Q6A163 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.75■□□□□ 0.91
KRT39Q6A163 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KRT39Q6A163 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.75■□□□□ 0.91
KRT39Q6A163 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT39Q6A163 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT39Q6A163 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
KRT39Q6A163 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT39Q6A163 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT39Q6A163 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KRT39Q6A163 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.74■□□□□ 0.91
KRT39Q6A163 TSPY21P-201ENST00000433481 731 ntBASIC20.74■□□□□ 0.91
KRT39Q6A163 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.74■□□□□ 0.91
KRT39Q6A163 AC018445.3-201ENST00000624177 1945 ntBASIC20.74■□□□□ 0.91
KRT39Q6A163 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
KRT39Q6A163 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.74■□□□□ 0.91
KRT39Q6A163 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 AL161938.1-201ENST00000569833 2180 ntBASIC20.73■□□□□ 0.91
KRT39Q6A163 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
KRT39Q6A163 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KRT39Q6A163 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.73■□□□□ 0.91
KRT39Q6A163 BX323043.1-201ENST00000641006 1765 ntBASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms