Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL512604.3-201ENST00000569583 964 ntBASIC19.55■□□□□ 0.72
USP39Q53GS9 MYC-208ENST00000641036 567 ntBASIC19.55■□□□□ 0.72
USP39Q53GS9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.55■□□□□ 0.72
USP39Q53GS9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.54■□□□□ 0.72
USP39Q53GS9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.54■□□□□ 0.72
USP39Q53GS9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
USP39Q53GS9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.54■□□□□ 0.72
USP39Q53GS9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
USP39Q53GS9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.54■□□□□ 0.72
USP39Q53GS9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.54■□□□□ 0.72
USP39Q53GS9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USP39Q53GS9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.54■□□□□ 0.72
USP39Q53GS9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP39Q53GS9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.53■□□□□ 0.72
USP39Q53GS9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 AFG3L1P-217ENST00000557444 2447 ntBASIC19.53■□□□□ 0.72
USP39Q53GS9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.53■□□□□ 0.72
USP39Q53GS9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
USP39Q53GS9 AC007663.1-201ENST00000438948 1240 ntBASIC19.53■□□□□ 0.72
USP39Q53GS9 TSPY17P-201ENST00000450329 467 ntBASIC19.53■□□□□ 0.72
USP39Q53GS9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP39Q53GS9 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.53■□□□□ 0.72
USP39Q53GS9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.53■□□□□ 0.72
USP39Q53GS9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.53■□□□□ 0.72
USP39Q53GS9 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.53■□□□□ 0.72
USP39Q53GS9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.53■□□□□ 0.72
USP39Q53GS9 AP000550.4-202ENST00000639755 178 ntBASIC19.53■□□□□ 0.72
USP39Q53GS9 AL031432.5-201ENST00000641059 760 ntBASIC19.53■□□□□ 0.72
USP39Q53GS9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.53■□□□□ 0.72
USP39Q53GS9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.53■□□□□ 0.72
USP39Q53GS9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP39Q53GS9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
USP39Q53GS9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.52■□□□□ 0.72
USP39Q53GS9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.52■□□□□ 0.72
USP39Q53GS9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.52■□□□□ 0.72
USP39Q53GS9 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 AC141257.4-201ENST00000634557 245 ntBASIC19.52■□□□□ 0.72
USP39Q53GS9 AC136944.6-201ENST00000634818 245 ntBASIC19.52■□□□□ 0.72
USP39Q53GS9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USP39Q53GS9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USP39Q53GS9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.52■□□□□ 0.72
USP39Q53GS9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP39Q53GS9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.52■□□□□ 0.72
USP39Q53GS9 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
USP39Q53GS9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP39Q53GS9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP39Q53GS9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
USP39Q53GS9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.51■□□□□ 0.71
USP39Q53GS9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms