Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL28A1Q2UY09 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL28A1Q2UY09 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 CCR12P-201ENST00000446203 998 ntBASIC18.45■□□□□ 0.54
COL28A1Q2UY09 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 AL031432.5-201ENST00000641059 760 ntBASIC18.45■□□□□ 0.54
COL28A1Q2UY09 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL28A1Q2UY09 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 LINC01006-201ENST00000333319 2292 ntBASIC18.44■□□□□ 0.54
COL28A1Q2UY09 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 GABARAPL3-202ENST00000624044 1851 ntBASIC18.44■□□□□ 0.54
COL28A1Q2UY09 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 AL022342.1-201ENST00000400363 863 ntBASIC18.44■□□□□ 0.54
COL28A1Q2UY09 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 KRT17P6-201ENST00000453795 1220 ntBASIC18.44■□□□□ 0.54
COL28A1Q2UY09 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 PRELID1P1-202ENST00000567272 903 ntBASIC18.44■□□□□ 0.54
COL28A1Q2UY09 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL28A1Q2UY09 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 ATP5G2P1-201ENST00000433580 426 ntBASIC18.43■□□□□ 0.54
COL28A1Q2UY09 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 AC140113.3-201ENST00000605663 199 ntBASIC18.43■□□□□ 0.54
COL28A1Q2UY09 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL28A1Q2UY09 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms