Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.84■□□□□ 0.61
PKNOX1P55347 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 YBX1P10-201ENST00000444752 975 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 TSPY6P-201ENST00000448518 926 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.84■□□□□ 0.61
PKNOX1P55347 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.84■□□□□ 0.61
PKNOX1P55347 AC097658.1-201ENST00000475555 843 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.84■□□□□ 0.61
PKNOX1P55347 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.84■□□□□ 0.61
PKNOX1P55347 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.84■□□□□ 0.61
PKNOX1P55347 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.84■□□□□ 0.61
PKNOX1P55347 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
PKNOX1P55347 AP006587.1-201ENST00000534129 1502 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PKNOX1P55347 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PKNOX1P55347 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PKNOX1P55347 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PKNOX1P55347 TEX21P-204ENST00000641479 1693 ntBASIC18.83■□□□□ 0.61
PKNOX1P55347 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
PKNOX1P55347 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PKNOX1P55347 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PKNOX1P55347 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.83■□□□□ 0.61
PKNOX1P55347 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
PKNOX1P55347 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.83■□□□□ 0.6
PKNOX1P55347 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PKNOX1P55347 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.83■□□□□ 0.6
PKNOX1P55347 MYC-209ENST00000641252 345 ntBASIC18.83■□□□□ 0.6
PKNOX1P55347 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PKNOX1P55347 AC092368.3-202ENST00000574180 1591 ntBASIC18.83■□□□□ 0.6
PKNOX1P55347 AC018470.1-201ENST00000624790 3129 ntBASIC18.83■□□□□ 0.6
PKNOX1P55347 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PKNOX1P55347 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PKNOX1P55347 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PKNOX1P55347 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.83■□□□□ 0.6
PKNOX1P55347 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PKNOX1P55347 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PKNOX1P55347 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PKNOX1P55347 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PKNOX1P55347 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PKNOX1P55347 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.82■□□□□ 0.6
PKNOX1P55347 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.82■□□□□ 0.6
PKNOX1P55347 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.82■□□□□ 0.6
PKNOX1P55347 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.82■□□□□ 0.6
PKNOX1P55347 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.82■□□□□ 0.6
PKNOX1P55347 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.82■□□□□ 0.6
PKNOX1P55347 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.82■□□□□ 0.6
PKNOX1P55347 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
PKNOX1P55347 KRT8P8-201ENST00000434750 1448 ntBASIC18.82■□□□□ 0.6
PKNOX1P55347 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PKNOX1P55347 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.81■□□□□ 0.6
PKNOX1P55347 AL161938.1-201ENST00000569833 2180 ntBASIC18.81■□□□□ 0.6
PKNOX1P55347 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.81■□□□□ 0.6
PKNOX1P55347 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.81■□□□□ 0.6
PKNOX1P55347 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 AC060766.5-201ENST00000590539 871 ntBASIC18.81■□□□□ 0.6
PKNOX1P55347 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.81■□□□□ 0.6
PKNOX1P55347 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms