Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 AC141586.3-201ENST00000562166 1838 ntBASIC18.63■□□□□ 0.57
HNF4AP41235 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.63■□□□□ 0.57
HNF4AP41235 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.63■□□□□ 0.57
HNF4AP41235 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 AC142381.4-202ENST00000563973 229 ntBASIC18.63■□□□□ 0.57
HNF4AP41235 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.63■□□□□ 0.57
HNF4AP41235 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.63■□□□□ 0.57
HNF4AP41235 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HNF4AP41235 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.62■□□□□ 0.57
HNF4AP41235 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HNF4AP41235 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.62■□□□□ 0.57
HNF4AP41235 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.62■□□□□ 0.57
HNF4AP41235 AC098590.1-201ENST00000468126 897 ntBASIC18.62■□□□□ 0.57
HNF4AP41235 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.62■□□□□ 0.57
HNF4AP41235 AC110285.5-201ENST00000611501 352 ntBASIC18.62■□□□□ 0.57
HNF4AP41235 AL359736.2-201ENST00000621992 437 ntBASIC18.62■□□□□ 0.57
HNF4AP41235 TMEM191A-211ENST00000637163 1067 ntBASIC18.62■□□□□ 0.57
HNF4AP41235 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 LINC01465-201ENST00000408887 1940 ntBASIC18.62■□□□□ 0.57
HNF4AP41235 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HNF4AP41235 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HNF4AP41235 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HNF4AP41235 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.61■□□□□ 0.57
HNF4AP41235 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
HNF4AP41235 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HNF4AP41235 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HNF4AP41235 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.61■□□□□ 0.57
HNF4AP41235 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.61■□□□□ 0.57
HNF4AP41235 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.61■□□□□ 0.57
HNF4AP41235 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.61■□□□□ 0.57
HNF4AP41235 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.61■□□□□ 0.57
HNF4AP41235 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.61■□□□□ 0.57
HNF4AP41235 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HNF4AP41235 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HNF4AP41235 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.61■□□□□ 0.57
HNF4AP41235 SDHAP1-207ENST00000440850 2000 ntBASIC18.61■□□□□ 0.57
HNF4AP41235 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HNF4AP41235 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.61■□□□□ 0.57
HNF4AP41235 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
HNF4AP41235 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 TEX21P-204ENST00000641479 1693 ntBASIC18.6■□□□□ 0.57
HNF4AP41235 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HNF4AP41235 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HNF4AP41235 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms