Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH3P22223 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CDH3P22223 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 KRT16P1-201ENST00000399124 1418 ntBASIC18.82■□□□□ 0.6
CDH3P22223 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH3P22223 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDH3P22223 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.81■□□□□ 0.6
CDH3P22223 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.81■□□□□ 0.6
CDH3P22223 AP003071.4-201ENST00000562276 1284 ntBASIC18.81■□□□□ 0.6
CDH3P22223 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH3P22223 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CDH3P22223 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CDH3P22223 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH3P22223 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH3P22223 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CDH3P22223 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH3P22223 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.8■□□□□ 0.6
CDH3P22223 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.8■□□□□ 0.6
CDH3P22223 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH3P22223 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.8■□□□□ 0.6
CDH3P22223 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH3P22223 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH3P22223 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH3P22223 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH3P22223 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDH3P22223 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.79■□□□□ 0.6
CDH3P22223 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 AL355075.4-201ENST00000554988 638 ntBASIC18.79■□□□□ 0.6
CDH3P22223 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.79■□□□□ 0.6
CDH3P22223 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH3P22223 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH3P22223 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 AC009237.14-201ENST00000609975 1594 ntBASIC18.79■□□□□ 0.6
CDH3P22223 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CDH3P22223 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH3P22223 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH3P22223 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH3P22223 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CDH3P22223 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDH3P22223 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDH3P22223 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH3P22223 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH3P22223 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 AC005082.1-201ENST00000413042 2259 ntBASIC18.78■□□□□ 0.6
CDH3P22223 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH3P22223 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH3P22223 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH3P22223 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH3P22223 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH3P22223 NUDT16P1-203ENST00000513809 620 ntBASIC18.78■□□□□ 0.6
CDH3P22223 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH3P22223 AC073912.3-201ENST00000624414 853 ntBASIC18.78■□□□□ 0.6
CDH3P22223 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH3P22223 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH3P22223 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH3P22223 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms