Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.54■□□□□ 0.56
LDLRP01130 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.54■□□□□ 0.56
LDLRP01130 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.54■□□□□ 0.56
LDLRP01130 AC069544.1-201ENST00000609399 999 ntBASIC18.54■□□□□ 0.56
LDLRP01130 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDLRP01130 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LDLRP01130 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDLRP01130 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDLRP01130 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDLRP01130 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDLRP01130 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.53■□□□□ 0.56
LDLRP01130 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LDLRP01130 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LDLRP01130 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.53■□□□□ 0.56
LDLRP01130 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.53■□□□□ 0.56
LDLRP01130 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 AC012618.2-201ENST00000428058 849 ntBASIC18.53■□□□□ 0.56
LDLRP01130 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 AC092368.3-202ENST00000574180 1591 ntBASIC18.53■□□□□ 0.56
LDLRP01130 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LDLRP01130 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 AC100791.3-201ENST00000617619 330 ntBASIC18.53■□□□□ 0.56
LDLRP01130 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
LDLRP01130 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LDLRP01130 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.53■□□□□ 0.56
LDLRP01130 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDLRP01130 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.53■□□□□ 0.56
LDLRP01130 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.53■□□□□ 0.56
LDLRP01130 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LDLRP01130 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LDLRP01130 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 KRT17P2-201ENST00000300992 1314 ntBASIC18.52■□□□□ 0.56
LDLRP01130 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.52■□□□□ 0.56
LDLRP01130 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.52■□□□□ 0.56
LDLRP01130 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.52■□□□□ 0.56
LDLRP01130 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.52■□□□□ 0.56
LDLRP01130 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.52■□□□□ 0.56
LDLRP01130 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.52■□□□□ 0.56
LDLRP01130 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 AC007322.3-201ENST00000426526 701 ntBASIC18.52■□□□□ 0.56
LDLRP01130 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.52■□□□□ 0.56
LDLRP01130 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.52■□□□□ 0.56
LDLRP01130 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LDLRP01130 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
LDLRP01130 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDLRP01130 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.52■□□□□ 0.55
LDLRP01130 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDLRP01130 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDLRP01130 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDLRP01130 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.52■□□□□ 0.55
LDLRP01130 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LDLRP01130 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDLRP01130 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.52■□□□□ 0.55
LDLRP01130 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
LDLRP01130 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDLRP01130 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.51■□□□□ 0.55
LDLRP01130 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.51■□□□□ 0.55
LDLRP01130 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.51■□□□□ 0.55
LDLRP01130 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.51■□□□□ 0.55
LDLRP01130 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms