Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.72■□□□□ 0.59
HDAC3O15379 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.72■□□□□ 0.59
HDAC3O15379 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC3O15379 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.72■□□□□ 0.59
HDAC3O15379 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.72■□□□□ 0.59
HDAC3O15379 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.72■□□□□ 0.59
HDAC3O15379 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.72■□□□□ 0.59
HDAC3O15379 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.72■□□□□ 0.59
HDAC3O15379 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC3O15379 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDAC3O15379 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HDAC3O15379 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HDAC3O15379 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HDAC3O15379 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC3O15379 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC3O15379 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.71■□□□□ 0.59
HDAC3O15379 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.71■□□□□ 0.59
HDAC3O15379 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.71■□□□□ 0.59
HDAC3O15379 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC3O15379 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HDAC3O15379 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC3O15379 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC3O15379 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
HDAC3O15379 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDAC3O15379 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC3O15379 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC3O15379 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.7■□□□□ 0.58
HDAC3O15379 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 AL354751.1-201ENST00000412768 1863 ntBASIC18.7■□□□□ 0.58
HDAC3O15379 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.7■□□□□ 0.58
HDAC3O15379 AC005829.2-201ENST00000571422 1056 ntBASIC18.7■□□□□ 0.58
HDAC3O15379 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HDAC3O15379 AC018470.1-201ENST00000624790 3129 ntBASIC18.7■□□□□ 0.58
HDAC3O15379 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC3O15379 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC3O15379 AC005332.8-201ENST00000622750 2735 ntBASIC18.7■□□□□ 0.58
HDAC3O15379 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC3O15379 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.7■□□□□ 0.58
HDAC3O15379 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC3O15379 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDAC3O15379 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.69■□□□□ 0.58
HDAC3O15379 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 FEM1AP3-201ENST00000403722 1741 ntBASIC18.69■□□□□ 0.58
HDAC3O15379 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.69■□□□□ 0.58
HDAC3O15379 KRT8P8-201ENST00000434750 1448 ntBASIC18.69■□□□□ 0.58
HDAC3O15379 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDAC3O15379 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.69■□□□□ 0.58
HDAC3O15379 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.69■□□□□ 0.58
HDAC3O15379 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HDAC3O15379 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.69■□□□□ 0.58
HDAC3O15379 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.69■□□□□ 0.58
HDAC3O15379 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.69■□□□□ 0.58
HDAC3O15379 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDAC3O15379 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.69■□□□□ 0.58
HDAC3O15379 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC3O15379 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC3O15379 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms