Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 KRT87P-202ENST00000534226 1464 ntBASIC15.47■□□□□ 0.07
HMGB3O15347 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 PCDHB18P-201ENST00000524813 2368 ntBASIC15.47■□□□□ 0.07
HMGB3O15347 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 AL356441.2-201ENST00000443009 864 ntBASIC15.47■□□□□ 0.07
HMGB3O15347 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 AL136162.1-201ENST00000607711 1078 ntBASIC15.47■□□□□ 0.07
HMGB3O15347 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB3O15347 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB3O15347 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 AL390961.4-201ENST00000623958 2535 ntBASIC15.47■□□□□ 0.07
HMGB3O15347 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB3O15347 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
HMGB3O15347 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB3O15347 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
HMGB3O15347 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGB3O15347 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 AC079140.4-201ENST00000507448 529 ntBASIC15.46■□□□□ 0.07
HMGB3O15347 SLC7A5P2-201ENST00000553010 536 ntBASIC15.46■□□□□ 0.07
HMGB3O15347 MPST-208ENST00000628507 698 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGB3O15347 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
HMGB3O15347 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
HMGB3O15347 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB3O15347 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB3O15347 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
HMGB3O15347 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
HMGB3O15347 MPST-204ENST00000404393 1329 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGB3O15347 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 MIR572-201ENST00000384983 95 ntBASIC15.45■□□□□ 0.06
HMGB3O15347 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
HMGB3O15347 AL136116.3-201ENST00000402907 1138 ntBASIC15.45■□□□□ 0.06
HMGB3O15347 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 AC007322.3-201ENST00000426526 701 ntBASIC15.45■□□□□ 0.06
HMGB3O15347 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 AC138907.5-202ENST00000569484 235 ntBASIC15.45■□□□□ 0.06
HMGB3O15347 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGB3O15347 FAM21FP-204ENST00000608637 956 ntBASIC15.45■□□□□ 0.06
HMGB3O15347 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
HMGB3O15347 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGB3O15347 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGB3O15347 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
HMGB3O15347 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
HMGB3O15347 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HMGB3O15347 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.44■□□□□ 0.06
HMGB3O15347 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
HMGB3O15347 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms