Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EIF4E2P1-201ENST00000393781 255 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 OR2W4P-201ENST00000406496 926 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RPL35AP3-201ENST00000414680 288 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 OR2AH1P-201ENST00000425717 928 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC007679.3-201ENST00000434035 414 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RPS3AP52-201ENST00000435639 297 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AL663074.2-201ENST00000440621 479 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC108161.1-201ENST00000461060 402 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC068228.1-201ENST00000461723 211 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 TRBV1-201ENST00000476502 284 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC092865.4-201ENST00000477936 615 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RPL38P3-201ENST00000484463 213 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC096576.1-201ENST00000489014 359 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 HIGD1AP13-201ENST00000509878 289 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 TOMM22P4-201ENST00000511318 336 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RPL39P5-202ENST00000512505 151 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 BTF3P13-201ENST00000513224 490 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RN7SKP67-201ENST00000515905 235 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RNU6-256P-201ENST00000516747 97 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RNU6-566P-201ENST00000516790 107 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 Y_RNA.718-201ENST00000517110 102 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 HMGB1P19-201ENST00000517578 577 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 MED21-206ENST00000546323 575 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 MIR4790-201ENST00000577799 79 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AL670379.10-201ENST00000604330 253 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AL670379.9-201ENST00000605428 253 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AP001437.1-201ENST00000608783 456 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AP001052.1-201ENST00000626421 99 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC093535.2-201ENST00000624769 2326 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC026951.1-201ENST00000559530 2459 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC139769.1-204ENST00000472297 1931 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AL139811.1-201ENST00000424779 2299 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC138907.8-201ENST00000623981 2256 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 COX6B1P3-201ENST00000312310 260 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 RNU6-190P-201ENST00000384154 102 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 HSPE1P8-201ENST00000406997 288 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 MIR548K-201ENST00000408406 116 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 RPL37P10-201ENST00000412884 288 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 VN1R36P-201ENST00000414936 291 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC079780.1-201ENST00000428259 207 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC073410.1-201ENST00000435125 589 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 BX679664.2-201ENST00000439282 283 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 RPL12P11-201ENST00000439970 501 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC019185.1-201ENST00000442718 389 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 TDGF1P1-201ENST00000445734 527 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC104058.1-201ENST00000448028 297 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC005077.1-201ENST00000449226 375 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 PPIAP27-201ENST00000453800 265 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 PFN1P6-201ENST00000476786 399 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC068587.1-201ENST00000483613 781 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC010350.1-201ENST00000504908 231 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC011853.1-201ENST00000518911 454 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms