Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.63□□□□□ -1.51
SOX4Q06945 HSPD1P15-201ENST00000505573 1122 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX4Q06945 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX4Q06945 AC093303.1-201ENST00000514549 295 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 RPL7P20-201ENST00000520308 745 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AC022634.1-201ENST00000520765 532 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.63□□□□□ -1.51
SOX4Q06945 AL117187.1-201ENST00000555482 181 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.63□□□□□ -1.51
SOX4Q06945 AC011447.4-201ENST00000587562 111 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AC010632.3-201ENST00000611377 369 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 MIR6730-201ENST00000622213 67 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AP002799.1-201ENST00000623552 423 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 AC135068.12-201ENST00000637370 931 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SOX4Q06945 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SOX4Q06945 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SOX4Q06945 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SOX4Q06945 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SOX4Q06945 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX4Q06945 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX4Q06945 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX4Q06945 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX4Q06945 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.63□□□□□ -1.51
SOX4Q06945 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX4Q06945 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 HSPA8P18-201ENST00000439846 1928 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX4Q06945 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SOX4Q06945 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SOX4Q06945 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX4Q06945 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 Y_RNA.187-201ENST00000363918 113 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 Y_RNA.339-201ENST00000365325 102 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RNU4-48P-201ENST00000365559 182 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RNU6-921P-201ENST00000384361 107 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RN7SKP125-201ENST00000410481 302 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RPL36AP36-201ENST00000418616 301 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 AC137499.1-201ENST00000427602 88 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 RPL23AP74-201ENST00000437246 471 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 HMGB1P4-201ENST00000455362 567 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RNU6-1208P-201ENST00000459588 107 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AL135752.1-201ENST00000479477 471 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC004062.1-201ENST00000509926 645 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 PTP4A1P4-201ENST00000512479 322 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 RN7SKP66-201ENST00000516681 231 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 RNU6-1137P-201ENST00000517073 99 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC012400.1-201ENST00000518452 381 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 COPS8P3-201ENST00000526024 482 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 AC092490.3-201ENST00000545370 572 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.62□□□□□ -1.51
SOX4Q06945 OR1F2P-201ENST00000570470 933 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX4Q06945 AL353997.4-201ENST00000586196 166 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX4Q06945 AC245389.1-201ENST00000605141 529 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 AC244517.12-201ENST00000623581 663 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 MTND5P33-201ENST00000571250 1450 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 NLRP3P1-201ENST00000622303 1785 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX4Q06945 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX4Q06945 CDC27P2-201ENST00000425026 1922 ntBASIC5.62□□□□□ -1.51
SOX4Q06945 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SOX4Q06945 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX4Q06945 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX4Q06945 AL355834.1-201ENST00000556602 3965 ntBASIC5.61□□□□□ -1.51
SOX4Q06945 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX4Q06945 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX4Q06945 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX4Q06945 RNU6-505P-201ENST00000384427 107 ntBASIC5.61□□□□□ -1.51
SOX4Q06945 RNU6-225P-201ENST00000384613 103 ntBASIC5.61□□□□□ -1.51
SOX4Q06945 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms