Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 USP9YP34-201ENST00000453983 808 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 PTGES3P5-201ENST00000455109 434 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 RPS26P3-201ENST00000470205 348 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC012181.1-201ENST00000479895 423 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC090543.2-201ENST00000483963 348 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC004057.1-201ENST00000485827 348 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC108941.1-201ENST00000502853 530 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 MTND1P6-201ENST00000523621 946 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 AC018645.2-201ENST00000609151 472 ntBASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CHMP4AQ9BY43 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC016769.3-201ENST00000396562 315 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC096533.1-201ENST00000411645 353 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL691449.1-201ENST00000426570 421 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 HIGD1AP4-201ENST00000430194 280 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 ARF4P2-201ENST00000430209 526 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC004866.2-201ENST00000438285 481 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL136097.1-201ENST00000456945 913 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 RPL21P11-201ENST00000461458 483 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC092757.1-201ENST00000467293 467 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 NIPA2P2-201ENST00000496376 1083 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC026412.2-201ENST00000512270 1075 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 ARL2BPP6-201ENST00000512757 439 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AP001636.2-201ENST00000525517 696 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 SNRPGP16-201ENST00000533275 226 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AP005205.1-201ENST00000563503 508 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC022968.1-201ENST00000567372 442 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC090666.1-201ENST00000578241 445 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL020997.2-201ENST00000602607 184 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC090912.3-201ENST00000609775 533 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 MIR6868-201ENST00000611215 58 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AL356585.4-201ENST00000623078 1229 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC095031.1-201ENST00000623685 672 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 AC091925.2-201ENST00000625059 256 ntBASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.17□□□□□ -1.58
CHMP4AQ9BY43 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 RNA5SP515-201ENST00000364570 118 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 SNORD65.1-201ENST00000390889 71 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 RPL27AP8-201ENST00000424277 446 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL645931.1-201ENST00000439737 410 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL133477.1-201ENST00000457472 514 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 FTH1P21-201ENST00000512179 511 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 IGLV3-26-201ENST00000520756 302 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC084824.1-201ENST00000550917 1005 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 MIR3912-201ENST00000577566 105 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL109653.1-201ENST00000603091 248 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AL606490.9-201ENST00000603331 271 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AC008638.3-201ENST00000603341 463 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 AP001521.1-201ENST00000609150 300 ntBASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms