Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC090971.5-201ENST00000621102 293 ntBASIC5.19□□□□□ -1.58
RNF4P78317 AL049767.1-202ENST00000637826 242 ntBASIC5.19□□□□□ -1.58
RNF4P78317 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
RNF4P78317 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 AC012618.3-205ENST00000637896 1496 ntBASIC5.19□□□□□ -1.58
RNF4P78317 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.19□□□□□ -1.58
RNF4P78317 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.19□□□□□ -1.58
RNF4P78317 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
RNF4P78317 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 AC083899.1-201ENST00000454465 3819 ntBASIC5.18□□□□□ -1.58
RNF4P78317 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
RNF4P78317 AC104260.2-201ENST00000623551 3497 ntBASIC5.18□□□□□ -1.58
RNF4P78317 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.18□□□□□ -1.58
RNF4P78317 AC073343.1-201ENST00000328239 651 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RNA5SP326-201ENST00000363209 110 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RN7SKP124-201ENST00000364730 341 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RNU4-66P-201ENST00000365199 138 ntBASIC5.18□□□□□ -1.58
RNF4P78317 Y_RNA.373-201ENST00000365600 103 ntBASIC5.18□□□□□ -1.58
RNF4P78317 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 RNU1-74P-201ENST00000384108 171 ntBASIC5.18□□□□□ -1.58
RNF4P78317 MIR551A-201ENST00000385042 96 ntBASIC5.18□□□□□ -1.58
RNF4P78317 Y_RNA.579-201ENST00000390939 94 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AL009179.1-201ENST00000406085 265 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RNA5SP345-201ENST00000410646 108 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RNU2-62P-201ENST00000410868 191 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.18□□□□□ -1.58
RNF4P78317 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC5.18□□□□□ -1.58
RNF4P78317 HSPE1P1-201ENST00000421494 318 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AC099336.2-201ENST00000422457 254 ntBASIC5.18□□□□□ -1.58
RNF4P78317 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 AL390119.1-201ENST00000440329 312 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.18□□□□□ -1.58
RNF4P78317 AL589765.3-201ENST00000446084 462 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 AC108059.3-201ENST00000456388 214 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AC099560.2-201ENST00000457554 255 ntBASIC5.18□□□□□ -1.58
RNF4P78317 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.18□□□□□ -1.58
RNF4P78317 AC105417.1-201ENST00000514691 285 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RN7SKP219-201ENST00000516825 296 ntBASIC5.18□□□□□ -1.58
RNF4P78317 RNU6-798P-201ENST00000516912 103 ntBASIC5.18□□□□□ -1.58
RNF4P78317 HMGB1P41-201ENST00000520234 440 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.18□□□□□ -1.58
RNF4P78317 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.18□□□□□ -1.58
RNF4P78317 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.18□□□□□ -1.58
RNF4P78317 COX6CP3-201ENST00000580869 223 ntBASIC5.18□□□□□ -1.58
RNF4P78317 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.18□□□□□ -1.58
RNF4P78317 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 AC130324.3-201ENST00000614165 542 ntBASIC5.18□□□□□ -1.58
RNF4P78317 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
RNF4P78317 AP000756.2-201ENST00000624168 2567 ntBASIC5.18□□□□□ -1.58
RNF4P78317 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 AC002525.1-201ENST00000624392 1622 ntBASIC5.18□□□□□ -1.58
RNF4P78317 ADAM24P-201ENST00000398655 2101 ntBASIC5.18□□□□□ -1.58
RNF4P78317 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.18□□□□□ -1.58
RNF4P78317 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
RNF4P78317 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.18□□□□□ -1.58
RNF4P78317 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
RNF4P78317 THAP12P4-201ENST00000528321 2266 ntBASIC5.17□□□□□ -1.58
RNF4P78317 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.17□□□□□ -1.58
RNF4P78317 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.17□□□□□ -1.58
RNF4P78317 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 AC011493.1-201ENST00000596753 1632 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AL121886.1-201ENST00000358609 435 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 RNU6-552P-201ENST00000362869 119 ntBASIC5.17□□□□□ -1.58
RNF4P78317 RNU4-44P-201ENST00000363050 141 ntBASIC5.17□□□□□ -1.58
RNF4P78317 U3.11-201ENST00000364476 212 ntBASIC5.17□□□□□ -1.58
RNF4P78317 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
RNF4P78317 AL606923.1-201ENST00000406616 190 ntBASIC5.17□□□□□ -1.58
RNF4P78317 RNU6-603P-201ENST00000411403 107 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.17□□□□□ -1.58
RNF4P78317 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 AC019185.1-201ENST00000442718 389 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 RPL7L1P8-201ENST00000469911 741 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms