Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 MIR1302-11-201ENST00000408051 138 ntBASIC5.63□□□□□ -1.51
LIG3P49916 MIR1302-9-201ENST00000408365 138 ntBASIC5.63□□□□□ -1.51
LIG3P49916 MIR1302-10-201ENST00000408734 138 ntBASIC5.63□□□□□ -1.51
LIG3P49916 OR3A2-201ENST00000408891 1076 ntBASIC5.63□□□□□ -1.51
LIG3P49916 RNU2-21P-201ENST00000410368 188 ntBASIC5.63□□□□□ -1.51
LIG3P49916 MTCO3P12-201ENST00000416718 547 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC009161.1-201ENST00000417306 376 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 TIMM9P1-201ENST00000436122 256 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC012075.1-201ENST00000436549 580 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 AL390119.1-201ENST00000440329 312 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 AC078785.3-201ENST00000476607 425 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC016559.2-201ENST00000510759 359 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 AC063949.1-201ENST00000552900 865 ntBASIC5.63□□□□□ -1.51
LIG3P49916 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 AL390726.5-202ENST00000564800 256 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC018552.3-201ENST00000567416 561 ntBASIC5.63□□□□□ -1.51
LIG3P49916 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.63□□□□□ -1.51
LIG3P49916 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 MIR1302-2-201ENST00000607096 138 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC109309.2-201ENST00000612597 332 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 RIOK3P1-201ENST00000418778 1528 ntBASIC5.63□□□□□ -1.51
LIG3P49916 ATP8A2P2-201ENST00000437678 1568 ntBASIC5.63□□□□□ -1.51
LIG3P49916 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.63□□□□□ -1.51
LIG3P49916 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.63□□□□□ -1.51
LIG3P49916 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.63□□□□□ -1.51
LIG3P49916 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIG3P49916 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 AL445437.1-201ENST00000623157 3087 ntBASIC5.62□□□□□ -1.51
LIG3P49916 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 RPL7P26-201ENST00000333817 754 ntBASIC5.62□□□□□ -1.51
LIG3P49916 Y_RNA.255-201ENST00000364581 97 ntBASIC5.62□□□□□ -1.51
LIG3P49916 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 RNU6-74P-201ENST00000384235 107 ntBASIC5.62□□□□□ -1.51
LIG3P49916 RNU6-606P-201ENST00000384721 111 ntBASIC5.62□□□□□ -1.51
LIG3P49916 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LIG3P49916 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LIG3P49916 AL136116.1-201ENST00000403591 381 ntBASIC5.62□□□□□ -1.51
LIG3P49916 RN7SKP32-201ENST00000410167 303 ntBASIC5.62□□□□□ -1.51
LIG3P49916 RN7SKP229-201ENST00000410465 302 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC096921.1-201ENST00000411661 375 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC004987.3-201ENST00000413879 771 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 AL356276.2-201ENST00000435919 558 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 CACYBPP2-201ENST00000453625 678 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC104308.1-201ENST00000454621 333 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 RPL38P4-201ENST00000502376 214 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC110792.2-201ENST00000510278 224 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC105029.1-201ENST00000520250 669 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 AC093027.1-201ENST00000546698 429 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC011611.1-201ENST00000552179 197 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.62□□□□□ -1.51
LIG3P49916 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG3P49916 MTCYBP13-201ENST00000578634 1093 ntBASIC5.62□□□□□ -1.51
LIG3P49916 MIR4311-201ENST00000580794 100 ntBASIC5.62□□□□□ -1.51
LIG3P49916 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.62□□□□□ -1.51
LIG3P49916 AC105224.1-201ENST00000587055 421 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 AC243960.4-201ENST00000600532 288 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AP001429.1-201ENST00000602568 530 ntBASIC5.62□□□□□ -1.51
LIG3P49916 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 uc_338.5-201ENST00000611839 155 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LIG3P49916 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms