Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 RNU6-623P-201ENST00000363143 105 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 U8.4-201ENST00000363626 134 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 RNU6-289P-201ENST00000364093 107 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 OR5H15-201ENST00000383696 930 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 RNU1-63P-201ENST00000383902 164 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 AC069218.2-201ENST00000411665 344 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 Z99497.1-201ENST00000421282 135 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 AL512286.1-201ENST00000439244 400 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 CEACAMP9-201ENST00000442990 513 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 COX6CP12-201ENST00000446748 202 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 RPL7P31-201ENST00000450192 724 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 AC104763.1-201ENST00000475274 360 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC005726.1-201ENST00000494679 427 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA1P49639 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 MTND3P5-201ENST00000512798 333 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC016065.2-201ENST00000514530 444 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC104986.1-201ENST00000517978 436 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA1P49639 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 OR4A45P-201ENST00000529954 901 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 OR5D15P-201ENST00000531671 942 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 APPL2-203ENST00000546731 684 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA1P49639 PCNPP1-201ENST00000552501 511 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA1P49639 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 RN7SL652P-201ENST00000577769 300 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 AL592436.1-201ENST00000605135 558 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 AC099842.1-201ENST00000619919 596 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 AC092656.1-203ENST00000624134 423 ntBASIC3.67□□□□□ -1.82
HOXA1P49639 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA1P49639 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
HOXA1P49639 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 RAD17P1-201ENST00000418130 2042 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXA1P49639 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 AL121657.1-201ENST00000327215 531 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 RNU5F-7P-201ENST00000363696 115 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 RNU6-1243P-201ENST00000364028 107 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 U1.1-201ENST00000384101 164 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 SNORA51.6-201ENST00000384151 125 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AL023807.1-201ENST00000407932 359 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 AC004987.3-201ENST00000413879 771 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 RPL23AP27-201ENST00000415161 451 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 MTCO1P21-201ENST00000416634 589 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA1P49639 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 OR4F13P-201ENST00000428478 931 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXA1P49639 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA1P49639 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 ISCUP1-201ENST00000454451 448 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA1P49639 RNU7-136P-201ENST00000458819 69 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 RNU6-956P-201ENST00000458868 103 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 RPL23AP62-201ENST00000463396 453 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AP000893.1-201ENST00000474462 794 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 RPS4XP14-201ENST00000493072 781 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 RNA5SP92-201ENST00000516437 110 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AP003033.1-201ENST00000527244 415 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 OR4A12P-201ENST00000530847 918 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AL139174.1-201ENST00000531489 886 ntBASIC3.66□□□□□ -1.82
HOXA1P49639 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA1P49639 MIR3186-201ENST00000577404 85 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms