Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL5A1P20908 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.8□□□□□ -1.96
COL5A1P20908 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL5A1P20908 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL5A1P20908 AC245054.2-201ENST00000415639 319 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AL590623.1-201ENST00000427864 105 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL5A1P20908 AC239798.3-201ENST00000454459 408 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC008413.1-201ENST00000511864 177 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC2.79□□□□□ -1.96
COL5A1P20908 AL049874.4-201ENST00000557593 255 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AL731537.2-201ENST00000561565 951 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC2.79□□□□□ -1.96
COL5A1P20908 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC2.79□□□□□ -1.96
COL5A1P20908 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC2.79□□□□□ -1.96
COL5A1P20908 AL035413.2-201ENST00000604801 525 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC026790.2-201ENST00000606282 430 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL5A1P20908 PLCE1P1-201ENST00000622094 305 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL5A1P20908 HMGB3P23-201ENST00000414981 585 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.79□□□□□ -1.96
COL5A1P20908 UQCRHP3-201ENST00000451503 251 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 snoU13.15-201ENST00000459407 104 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 FAM172BP-201ENST00000487497 1089 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 RWDD4P1-201ENST00000488019 565 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.79□□□□□ -1.96
COL5A1P20908 RNU4-29P-201ENST00000515943 174 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC068657.1-201ENST00000520807 306 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.79□□□□□ -1.96
COL5A1P20908 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC2.79□□□□□ -1.96
COL5A1P20908 AC107918.3-201ENST00000533272 382 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.79□□□□□ -1.96
COL5A1P20908 AC007566.2-201ENST00000603642 413 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.79□□□□□ -1.96
COL5A1P20908 AC073592.7-201ENST00000623659 507 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC064859.1-201ENST00000624741 174 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC091948.2-201ENST00000636510 279 ntBASIC2.79□□□□□ -1.96
COL5A1P20908 AC046144.1-201ENST00000478559 1853 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.78□□□□□ -1.96
COL5A1P20908 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 RN7SKP58-201ENST00000411010 305 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 TEX41-204ENST00000423031 491 ntTSL 4 BASIC2.78□□□□□ -1.96
COL5A1P20908 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 DUTP6-201ENST00000425573 462 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 RSL24D1P8-201ENST00000434442 492 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 SDR42E1P3-201ENST00000438345 502 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.78□□□□□ -1.96
COL5A1P20908 AC017099.1-201ENST00000448261 1028 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.78□□□□□ -1.96
COL5A1P20908 TPRKBP1-201ENST00000456243 481 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 RPS3P1-201ENST00000456781 192 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC2.78□□□□□ -1.96
COL5A1P20908 AC005351.1-201ENST00000511152 786 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 CCNHP1-201ENST00000513311 678 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 RNU6-991P-201ENST00000516168 107 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC2.78□□□□□ -1.96
COL5A1P20908 AC025857.1-201ENST00000525252 377 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 AC096947.1-201ENST00000603233 470 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 AC022509.4-201ENST00000621404 572 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 AP003499.2-201ENST00000624100 483 ntBASIC2.78□□□□□ -1.96
COL5A1P20908 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.78□□□□□ -1.96
COL5A1P20908 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A1P20908 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.78□□□□□ -1.97
COL5A1P20908 OR5T3-201ENST00000303059 1023 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 PARD3-204ENST00000374768 799 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A1P20908 SNORA67.4-201ENST00000384688 142 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 USP9YP19-201ENST00000412165 485 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 NPM1P24-201ENST00000428039 894 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 B3GNT2P1-201ENST00000434960 952 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A1P20908 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.77□□□□□ -1.97
COL5A1P20908 SCGB1D5P-201ENST00000515134 247 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 RNA5SP24-201ENST00000516478 95 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC2.77□□□□□ -1.97
COL5A1P20908 ATP5F1P7-201ENST00000567330 760 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 BX322635.1-201ENST00000605804 496 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
COL5A1P20908 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL5A1P20908 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC2.77□□□□□ -1.97
COL5A1P20908 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A1P20908 AC093831.2-201ENST00000624393 3427 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 MIR148B-201ENST00000362252 99 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 RNU6-819P-201ENST00000364116 107 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL5A1P20908 ATP5F1P6-201ENST00000402768 767 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A1P20908 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A1P20908 RANP7-201ENST00000418085 644 ntBASIC2.77□□□□□ -1.97
COL5A1P20908 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A1P20908 AC105402.2-201ENST00000438503 358 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms