Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSH3P20585 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.91□□□□□ -1.78
MSH3P20585 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.78
MSH3P20585 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.9□□□□□ -1.78
MSH3P20585 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
MSH3P20585 DBF4P1-201ENST00000412976 1892 ntBASIC3.9□□□□□ -1.78
MSH3P20585 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.9□□□□□ -1.78
MSH3P20585 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 AC016716.1-201ENST00000265882 708 ntBASIC3.9□□□□□ -1.79
MSH3P20585 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 RNA5SP391-201ENST00000363456 119 ntBASIC3.9□□□□□ -1.79
MSH3P20585 SUGT1P1-201ENST00000379514 476 ntBASIC3.9□□□□□ -1.79
MSH3P20585 ATP5F1P3-201ENST00000397213 657 ntBASIC3.9□□□□□ -1.79
MSH3P20585 PRRC2CP1-201ENST00000404428 159 ntBASIC3.9□□□□□ -1.79
MSH3P20585 RNU4-72P-201ENST00000410754 173 ntBASIC3.9□□□□□ -1.79
MSH3P20585 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 FCF1P2-201ENST00000415284 583 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC009518.2-201ENST00000418056 731 ntBASIC3.9□□□□□ -1.79
MSH3P20585 BOLA3P4-201ENST00000418151 400 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC009237.2-201ENST00000421358 284 ntBASIC3.9□□□□□ -1.79
MSH3P20585 FTH1P6-201ENST00000430768 320 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AL365396.1-201ENST00000430854 671 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC023347.2-201ENST00000433994 462 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.9□□□□□ -1.79
MSH3P20585 YWHAZP7-201ENST00000436906 631 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC105402.2-201ENST00000438503 358 ntBASIC3.9□□□□□ -1.79
MSH3P20585 MTND5P2-201ENST00000442927 1142 ntBASIC3.9□□□□□ -1.79
MSH3P20585 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 RANP8-201ENST00000444720 713 ntBASIC3.9□□□□□ -1.79
MSH3P20585 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.9□□□□□ -1.79
MSH3P20585 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 RPL7P18-201ENST00000478965 734 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AP000926.1-201ENST00000479573 241 ntBASIC3.9□□□□□ -1.79
MSH3P20585 GAPDHP36-201ENST00000480688 918 ntBASIC3.9□□□□□ -1.79
MSH3P20585 BET1P1-201ENST00000482276 359 ntBASIC3.9□□□□□ -1.79
MSH3P20585 RPS4XP15-201ENST00000489210 795 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.9□□□□□ -1.79
MSH3P20585 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 AC010460.1-201ENST00000507087 466 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC105313.1-201ENST00000509121 353 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC109445.1-201ENST00000512356 383 ntBASIC3.9□□□□□ -1.79
MSH3P20585 RNU6-202P-201ENST00000515998 96 ntBASIC3.9□□□□□ -1.79
MSH3P20585 RN7SKP21-201ENST00000516503 220 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 AC105185.1-201ENST00000518705 535 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 OR4A12P-201ENST00000530847 918 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.9□□□□□ -1.79
MSH3P20585 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.9□□□□□ -1.79
MSH3P20585 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 HIGD1AP17-201ENST00000554576 276 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC008015.1-201ENST00000555505 465 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.9□□□□□ -1.79
MSH3P20585 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.9□□□□□ -1.79
MSH3P20585 AC109446.2-201ENST00000567872 497 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC002400.1-201ENST00000569310 726 ntBASIC3.9□□□□□ -1.79
MSH3P20585 MIR4458-201ENST00000578872 75 ntBASIC3.9□□□□□ -1.79
MSH3P20585 OR4K7P-201ENST00000580232 945 ntBASIC3.9□□□□□ -1.79
MSH3P20585 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 AC005255.1-201ENST00000593748 216 ntBASIC3.9□□□□□ -1.79
MSH3P20585 VN1R82P-201ENST00000601481 356 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC131235.4-201ENST00000609288 620 ntBASIC3.9□□□□□ -1.79
MSH3P20585 MIR486-1-201ENST00000612171 68 ntBASIC3.9□□□□□ -1.79
MSH3P20585 MIR6798-201ENST00000612887 67 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AL139418.1-201ENST00000613613 177 ntBASIC3.9□□□□□ -1.79
MSH3P20585 MIR6875-201ENST00000617506 72 ntBASIC3.9□□□□□ -1.79
MSH3P20585 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 AC116618.1-201ENST00000634617 774 ntBASIC3.9□□□□□ -1.79
MSH3P20585 AC103706.2-201ENST00000638080 240 ntBASIC3.9□□□□□ -1.79
MSH3P20585 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.9□□□□□ -1.79
MSH3P20585 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH3P20585 UBE3AP2-201ENST00000429033 2259 ntBASIC3.9□□□□□ -1.79
MSH3P20585 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 SGO1P2-201ENST00000429458 1589 ntBASIC3.89□□□□□ -1.79
MSH3P20585 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 AC090229.1-201ENST00000590983 1609 ntBASIC3.89□□□□□ -1.79
MSH3P20585 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 AC007685.1-201ENST00000329806 452 ntBASIC3.89□□□□□ -1.79
MSH3P20585 RNU6-492P-201ENST00000363035 104 ntBASIC3.89□□□□□ -1.79
MSH3P20585 RNU5D-1-201ENST00000363299 116 ntBASIC3.89□□□□□ -1.79
MSH3P20585 RNA5SP322-201ENST00000363617 119 ntBASIC3.89□□□□□ -1.79
MSH3P20585 RNU6-621P-201ENST00000364752 109 ntBASIC3.89□□□□□ -1.79
MSH3P20585 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms