Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
MSH4O15457 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH4O15457 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
MSH4O15457 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSH4O15457 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH4O15457 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH4O15457 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH4O15457 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 MIR491-201ENST00000384877 84 ntBASIC3.61□□□□□ -1.83
MSH4O15457 MIR153-1-201ENST00000384914 90 ntBASIC3.61□□□□□ -1.83
MSH4O15457 MIR525-201ENST00000384978 85 ntBASIC3.61□□□□□ -1.83
MSH4O15457 DNAJC19P6-201ENST00000401853 280 ntBASIC3.61□□□□□ -1.83
MSH4O15457 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.61□□□□□ -1.83
MSH4O15457 RNA5SP31-201ENST00000411144 127 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 BX664727.1-201ENST00000416024 466 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.61□□□□□ -1.83
MSH4O15457 RPS15AP40-201ENST00000419621 391 ntBASIC3.61□□□□□ -1.83
MSH4O15457 UBE2D3P3-201ENST00000426992 425 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH4O15457 MTND1P33-201ENST00000446251 917 ntBASIC3.61□□□□□ -1.83
MSH4O15457 Z99127.3-201ENST00000448158 395 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC115115.1-201ENST00000449927 248 ntBASIC3.61□□□□□ -1.83
MSH4O15457 snoU13.7-201ENST00000459220 104 ntBASIC3.61□□□□□ -1.83
MSH4O15457 RN7SL863P-201ENST00000462370 296 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC015724.1-201ENST00000478577 156 ntBASIC3.61□□□□□ -1.83
MSH4O15457 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 NIPA2P2-201ENST00000496376 1083 ntBASIC3.61□□□□□ -1.83
MSH4O15457 CAB39P1-201ENST00000502277 460 ntBASIC3.61□□□□□ -1.83
MSH4O15457 MTCO2P9-201ENST00000503214 694 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC121161.1-201ENST00000510606 652 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.61□□□□□ -1.83
MSH4O15457 FABP5P12-201ENST00000515543 389 ntBASIC3.61□□□□□ -1.83
MSH4O15457 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.61□□□□□ -1.83
MSH4O15457 RN7SKP234-201ENST00000517173 224 ntBASIC3.61□□□□□ -1.83
MSH4O15457 SCARNA20.6-201ENST00000517251 106 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSH4O15457 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 MTND2P26-201ENST00000528255 1029 ntBASIC3.61□□□□□ -1.83
MSH4O15457 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
MSH4O15457 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.61□□□□□ -1.83
MSH4O15457 AC006518.1-201ENST00000541449 943 ntBASIC3.61□□□□□ -1.83
MSH4O15457 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH4O15457 AC074029.1-201ENST00000552531 1044 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AGGF1P8-201ENST00000562979 1000 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 MIR3200-201ENST00000580767 85 ntBASIC3.61□□□□□ -1.83
MSH4O15457 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 AC012493.2-201ENST00000595083 291 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC083899.3-201ENST00000603413 594 ntBASIC3.61□□□□□ -1.83
MSH4O15457 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 AC105429.2-201ENST00000610567 517 ntBASIC3.61□□□□□ -1.83
MSH4O15457 uc_338.25-201ENST00000613756 156 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AC091953.5-201ENST00000622919 233 ntBASIC3.61□□□□□ -1.83
MSH4O15457 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH4O15457 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.61□□□□□ -1.83
MSH4O15457 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH4O15457 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.61□□□□□ -1.83
MSH4O15457 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
MSH4O15457 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSH4O15457 MTCO1P4-201ENST00000520516 1409 ntBASIC3.61□□□□□ -1.83
MSH4O15457 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSH4O15457 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSH4O15457 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH4O15457 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSH4O15457 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 ZNF33CP-201ENST00000432492 2030 ntBASIC3.6□□□□□ -1.83
MSH4O15457 RNA5SP374-201ENST00000362939 125 ntBASIC3.6□□□□□ -1.83
MSH4O15457 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 RPL31P45-201ENST00000419532 356 ntBASIC3.6□□□□□ -1.83
MSH4O15457 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 ELOCP23-201ENST00000452014 332 ntBASIC3.6□□□□□ -1.83
MSH4O15457 RPL32P14-201ENST00000463196 378 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC087312.1-201ENST00000471411 480 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC087385.1-201ENST00000475062 312 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC068305.1-201ENST00000497406 726 ntBASIC3.6□□□□□ -1.83
MSH4O15457 SNORA70.24-201ENST00000517233 118 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH4O15457 LLPHP1-201ENST00000603571 367 ntBASIC3.6□□□□□ -1.83
MSH4O15457 BNIP3P4-201ENST00000604946 565 ntBASIC3.6□□□□□ -1.83
MSH4O15457 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 AL592295.2-201ENST00000612578 206 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC105227.2-201ENST00000615075 605 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC138932.5-201ENST00000617759 563 ntBASIC3.6□□□□□ -1.83
MSH4O15457 MIR8057-201ENST00000620957 69 ntBASIC3.6□□□□□ -1.83
MSH4O15457 AC018692.3-201ENST00000623929 123 ntBASIC3.6□□□□□ -1.83
MSH4O15457 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSH4O15457 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH4O15457 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSH4O15457 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 464.6 ms