Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 FRG1CP-201ENST00000358464 769 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 RNA5SP119-201ENST00000362715 117 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 RNA5SP171-201ENST00000391071 115 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL391417.1-201ENST00000404100 426 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 MTCYBP24-201ENST00000420387 1106 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC006989.1-201ENST00000427212 131 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC073063.1-201ENST00000434352 607 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 MTCYBP42-201ENST00000444653 1130 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 HMGB1P16-201ENST00000447155 540 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 HMGN2P21-201ENST00000447764 270 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 PDSS1P2-201ENST00000449397 678 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 RBMY2UP-201ENST00000453474 324 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 MTCO3P20-201ENST00000454926 688 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 U3.44-201ENST00000458938 192 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AP000873.1-201ENST00000463987 400 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 DYNLL1P6-201ENST00000503440 264 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 IGLVIV-53-201ENST00000520107 367 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 OR4R3P-201ENST00000525084 838 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL121576.1-201ENST00000556055 276 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC093519.1-201ENST00000566109 298 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 BNIP3P27-201ENST00000599991 412 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 U3.45-201ENST00000607547 219 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC004825.2-201ENST00000616634 455 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 U73479.1-201ENST00000618062 168 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL357559.1-201ENST00000622228 274 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AP003355.3-201ENST00000623465 114 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL512506.2-201ENST00000624472 458 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC244258.1-201ENST00000637553 1071 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AC106871.1-201ENST00000568324 3102 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL359893.1-201ENST00000447628 1580 ntBASIC3.58□□□□□ -1.84
LHX3Q9UBR4 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 HMGB1P5-201ENST00000255320 642 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 MIR23B-201ENST00000384832 97 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 MIR218-2-201ENST00000385006 110 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AL133264.1-201ENST00000407157 562 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RPS3AP25-201ENST00000411660 793 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC245052.5-201ENST00000416320 649 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC012497.1-201ENST00000429392 575 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 CYCSP43-201ENST00000438233 310 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC092641.1-201ENST00000440229 772 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RPS20P32-201ENST00000456044 356 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RPL6P9-201ENST00000466502 859 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RN7SL594P-201ENST00000470590 287 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC007537.2-201ENST00000472093 511 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RPS3AP50-201ENST00000487064 803 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RPL5P23-201ENST00000496040 868 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC010376.1-201ENST00000522101 334 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 ARL2BPP5-201ENST00000523141 481 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC019227.1-201ENST00000526902 510 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC118942.1-201ENST00000529674 1035 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 LSM6P2-201ENST00000552208 177 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC122134.1-202ENST00000569111 1201 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AL139286.1-201ENST00000604465 483 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AF129408.1-201ENST00000608767 431 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AP003485.1-201ENST00000625093 753 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms