Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL590103.1-201ENST00000434488 307 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 ISCA1P2-201ENST00000438679 421 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC4.3□□□□□ -1.72
PTPN9P43378 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN9P43378 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 TRGVB-201ENST00000453257 471 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN9P43378 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.3□□□□□ -1.72
PTPN9P43378 SYPL1P1-201ENST00000473622 768 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
PTPN9P43378 AC108078.3-201ENST00000502633 489 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.3□□□□□ -1.72
PTPN9P43378 AC112198.1-201ENST00000505369 1220 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 MTATP6P22-201ENST00000507369 598 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN9P43378 RNY4P37-201ENST00000516225 96 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 RNU7-143P-201ENST00000516781 65 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN9P43378 CYCSP29-201ENST00000533731 318 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.3□□□□□ -1.72
PTPN9P43378 AC007954.1-201ENST00000554198 494 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 MIR4504-201ENST00000577413 92 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC023575.1-201ENST00000580510 358 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN9P43378 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.3□□□□□ -1.72
PTPN9P43378 AL139286.1-201ENST00000604465 483 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AL163642.2-201ENST00000604722 1019 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC105129.3-201ENST00000605455 485 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN9P43378 MLECP1-201ENST00000615893 709 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 AC092184.1-201ENST00000625042 715 ntBASIC4.3□□□□□ -1.72
PTPN9P43378 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PTPN9P43378 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
PTPN9P43378 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN9P43378 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 ELL2P4-201ENST00000446870 1376 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 IQCB2P-201ENST00000401788 1633 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 RNU6-500P-201ENST00000362349 107 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 RNU6-1243P-201ENST00000364028 107 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 RNU6-657P-201ENST00000383904 107 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 RNU6-253P-201ENST00000384730 105 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 MIR513A2-201ENST00000385249 127 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 AL023807.1-201ENST00000407932 359 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 MOB4-205ENST00000409916 829 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 USP9YP33-201ENST00000412220 421 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 RPS15AP38-201ENST00000413110 372 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 RPL23AP39-201ENST00000415533 405 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 AL138785.1-201ENST00000425821 331 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 USP9YP35-201ENST00000435696 412 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC092427.1-201ENST00000439177 601 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN9P43378 NUTF2P3-201ENST00000448540 384 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN9P43378 RN7SL604P-201ENST00000492589 296 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC104685.1-201ENST00000502445 371 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 HSPE1P23-201ENST00000509838 286 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC093281.2-201ENST00000510153 597 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN9P43378 RNA5SP216-201ENST00000516111 123 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN9P43378 DEFB131D-201ENST00000526803 184 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN9P43378 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN9P43378 HNRNPCP4-201ENST00000571636 900 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN9P43378 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 RN7SL600P-201ENST00000581811 299 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 MIR3939-201ENST00000582614 106 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC020914.6-201ENST00000594327 272 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC025946.2-201ENST00000603398 234 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 AC010738.1-201ENST00000604970 987 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 ARF4P1-201ENST00000605447 541 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 HSPE1P14-201ENST00000605812 302 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 FAM157B-203ENST00000639350 358 ntBASIC4.29□□□□□ -1.72
PTPN9P43378 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.29□□□□□ -1.72
PTPN9P43378 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PTPN9P43378 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN9P43378 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms