Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC087650.1-201ENST00000431445 468 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC007389.2-201ENST00000434630 306 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC6.68□□□□□ -1.34
COL9A1P20849 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC6.68□□□□□ -1.34
COL9A1P20849 PIGFP3-201ENST00000441918 722 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC022034.3-201ENST00000471393 478 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RN7SKP66-201ENST00000516681 231 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 SNORA31.18-201ENST00000517043 134 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RNA5SP400-201ENST00000517155 111 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.68□□□□□ -1.34
COL9A1P20849 MRPS18CP4-201ENST00000535821 231 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 OR1M4P-201ENST00000589199 287 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC108706.1-201ENST00000611053 297 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AL049539.1-201ENST00000611964 459 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 uc_338.18-201ENST00000615451 175 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.68□□□□□ -1.34
COL9A1P20849 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.68□□□□□ -1.34
COL9A1P20849 AL031119.1-201ENST00000404707 1879 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC6.68□□□□□ -1.34
COL9A1P20849 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 GNL2P1-201ENST00000451274 2190 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AL139384.2-201ENST00000613809 3590 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
COL9A1P20849 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 USP13-203ENST00000496897 2747 ntTSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 SNORD50.1-201ENST00000362987 71 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 Y_RNA.233-201ENST00000364407 101 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 RNU6-701P-201ENST00000384059 107 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 AL109941.1-201ENST00000401925 229 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 RN7SKP51-201ENST00000410781 304 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.67□□□□□ -1.34
COL9A1P20849 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 RPL12P17-201ENST00000432393 498 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.67□□□□□ -1.34
COL9A1P20849 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC6.67□□□□□ -1.34
COL9A1P20849 BX510359.5-201ENST00000515651 304 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AL133399.1-201ENST00000527476 298 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 SYF2P1-201ENST00000550658 413 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AC091078.2-201ENST00000557145 559 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.67□□□□□ -1.34
COL9A1P20849 AP003115.1-201ENST00000569849 463 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 MIR1254-2-201ENST00000579553 63 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 AL691477.1-201ENST00000624398 162 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.67□□□□□ -1.34
COL9A1P20849 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 AC020658.2-201ENST00000559030 4020 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 AP001148.1-201ENST00000624124 2359 ntBASIC6.67□□□□□ -1.34
COL9A1P20849 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC6.67□□□□□ -1.34
COL9A1P20849 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC6.67□□□□□ -1.34
COL9A1P20849 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL9A1P20849 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
COL9A1P20849 SLC2A3P1-201ENST00000519666 1451 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AP003175.1-201ENST00000641383 6658 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
COL9A1P20849 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.66□□□□□ -1.34
COL9A1P20849 HYDIN2-203ENST00000614586 13885 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.66□□□□□ -1.34
COL9A1P20849 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 Y_RNA.44-201ENST00000362676 108 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 RNA5SP350-201ENST00000363298 111 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 RNU6-595P-201ENST00000363944 107 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 RNU6-1035P-201ENST00000384477 107 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL590704.1-201ENST00000402856 794 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL033519.2-201ENST00000403958 392 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL513475.1-201ENST00000406602 315 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms