Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 SGO1P2-201ENST00000429458 1589 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 RNU1-14P-201ENST00000362759 152 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 Y_RNA.169-201ENST00000363745 96 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 SNORA70.2-201ENST00000364506 135 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 ATP5F1P4-201ENST00000397288 746 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 SNRPEP2-201ENST00000397592 279 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL603766.1-201ENST00000407763 664 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 SNORA11F-201ENST00000408237 128 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 MIR1179-201ENST00000408703 91 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL593851.1-201ENST00000426171 157 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC096632.1-201ENST00000427395 310 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 MTCO1P48-201ENST00000448024 1096 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC104073.1-201ENST00000451988 151 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 BX276092.4-201ENST00000452056 248 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 ATG12P2-201ENST00000456830 416 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 MTCO3P2-201ENST00000457365 171 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC092757.1-201ENST00000467293 467 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 RN7SL303P-201ENST00000469773 251 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 RN7SL810P-201ENST00000493031 276 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 BNIP3P41-201ENST00000503774 571 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC147055.4-201ENST00000504399 745 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 MIR2114-201ENST00000516645 80 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 OR5AK1P-201ENST00000524837 922 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 SLC2A13P1-201ENST00000531560 322 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC125611.1-201ENST00000549563 229 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC107016.1-201ENST00000550463 337 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 MIR3939-201ENST00000582614 106 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 MIR4999-201ENST00000585029 91 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 VN1R82P-201ENST00000601481 356 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC009220.3-201ENST00000604318 586 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AC023043.4-201ENST00000612081 449 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL607023.1-201ENST00000620045 248 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
NKX3-1Q99801 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX3-1Q99801 MTND5P24-201ENST00000438892 1767 ntBASIC3.56□□□□□ -1.84
NKX3-1Q99801 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL356489.2-201ENST00000566968 3528 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC016769.3-201ENST00000396562 315 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 RPL23AP29-201ENST00000397284 453 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 ARF4P3-201ENST00000397387 509 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RPS29P17-201ENST00000430795 166 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RPS6P15-201ENST00000431996 751 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 GSTA7P-201ENST00000438425 448 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 MTND5P2-201ENST00000442927 1142 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 SETD6P1-201ENST00000444575 317 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 VN1R10P-201ENST00000447106 875 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL133217.1-201ENST00000450980 425 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 TRGVB-201ENST00000453257 471 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 RPL23AP81-201ENST00000455252 467 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms