Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Z99714.1-201ENST00000450463 807 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 HMGN3P1-201ENST00000453847 193 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 RPS17P11-201ENST00000474297 293 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS35Q96QK1 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC104057.1-201ENST00000515547 497 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 RNU6-579P-201ENST00000516879 102 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC008489.1-201ENST00000524271 483 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 OR4R3P-201ENST00000525084 838 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 OR8K4P-201ENST00000534608 872 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC006518.2-201ENST00000542513 940 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 GTF2IP22-201ENST00000554443 182 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC010928.3-201ENST00000587712 541 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 U73479.1-201ENST00000618062 168 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AL732372.2-225ENST00000642124 456 ntBASIC3.6□□□□□ -1.83
VPS35Q96QK1 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS35Q96QK1 AC090337.1-201ENST00000579651 2074 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AP001148.1-201ENST00000624124 2359 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 RNU6-374P-201ENST00000364146 108 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 OR1L1-202ENST00000373686 1083 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 RNU6-921P-201ENST00000384361 107 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 SNORA40.4-201ENST00000390971 128 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 MTCO2P31-201ENST00000402702 684 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 RPS15AP6-201ENST00000420703 385 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 SDCBPP2-201ENST00000424643 885 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 Z95327.1-201ENST00000446082 482 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 RPL7P59-201ENST00000447700 943 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 MTCO3P27-201ENST00000514397 196 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 MTCO1P30-201ENST00000515244 580 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC026403.1-201ENST00000518938 295 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AP003355.1-201ENST00000518956 587 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC093331.1-201ENST00000521474 169 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AP001207.1-201ENST00000524051 481 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AP000926.4-201ENST00000527351 454 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 MTND5P21-201ENST00000531961 522 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC092470.1-201ENST00000546187 132 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC023161.2-201ENST00000551218 780 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC074051.3-201ENST00000570238 358 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC090616.5-202ENST00000582111 297 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC002487.1-201ENST00000604565 994 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC245389.1-201ENST00000605141 529 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC069209.1-201ENST00000619282 651 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 XIST_intron.1-201ENST00000619444 68 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS35Q96QK1 ZNF542P-204ENST00000482727 1305 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 MFSD8-236ENST00000641509 4050 ntBASIC3.59□□□□□ -1.83
VPS35Q96QK1 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS35Q96QK1 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS35Q96QK1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS35Q96QK1 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS35Q96QK1 CR381670.1-201ENST00000624291 1693 ntBASIC3.59□□□□□ -1.84
VPS35Q96QK1 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS35Q96QK1 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 SNORA62.3-201ENST00000365110 153 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 RNU6-549P-201ENST00000384433 107 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS35Q96QK1 RN7SKP285-201ENST00000410137 318 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC007390.1-201ENST00000415722 356 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 CYCSP4-201ENST00000429682 331 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 NPM1P49-201ENST00000448027 714 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC010468.1-201ENST00000461022 817 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms