Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC087565.3-202ENST00000642085 1603 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 RNU6-317P-201ENST00000384031 107 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 MIR504-201ENST00000385065 83 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 RNA5SP21-201ENST00000410917 96 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.61□□□□□ -1.83
BRCA1P38398 AL445528.1-201ENST00000426330 420 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.61□□□□□ -1.83
BRCA1P38398 FTH1P6-201ENST00000430768 320 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 CASP3P1-201ENST00000446037 609 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.61□□□□□ -1.83
BRCA1P38398 AC108471.1-201ENST00000513977 287 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 SNORA70.19-201ENST00000516717 90 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.61□□□□□ -1.83
BRCA1P38398 AC015911.5-201ENST00000587076 451 ntBASIC3.61□□□□□ -1.83
BRCA1P38398 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.61□□□□□ -1.83
BRCA1P38398 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.61□□□□□ -1.83
BRCA1P38398 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
BRCA1P38398 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
BRCA1P38398 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
BRCA1P38398 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.61□□□□□ -1.83
BRCA1P38398 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
BRCA1P38398 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
BRCA1P38398 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
BRCA1P38398 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 RPL26P37-201ENST00000411983 438 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 AC233981.1-201ENST00000423224 461 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.6□□□□□ -1.83
BRCA1P38398 AC090312.2-201ENST00000582687 378 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 AC096947.1-201ENST00000603233 470 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 AC025946.2-201ENST00000603398 234 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 AC022509.4-201ENST00000621404 572 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.6□□□□□ -1.83
BRCA1P38398 RNU1-112P-201ENST00000364401 164 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 RNU6-304P-201ENST00000364855 107 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 U3.42-201ENST00000408746 214 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 RN7SKP192-201ENST00000411291 327 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 MRPL50P2-201ENST00000416821 482 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.6□□□□□ -1.83
BRCA1P38398 ZYG11AP1-201ENST00000430329 837 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 RPL12P26-201ENST00000452430 487 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 IFNWP4-201ENST00000453148 294 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 RNU6-1218P-201ENST00000458990 108 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.6□□□□□ -1.83
BRCA1P38398 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.6□□□□□ -1.83
BRCA1P38398 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.6□□□□□ -1.83
BRCA1P38398 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 AC008676.3-201ENST00000521237 435 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC3.6□□□□□ -1.83
BRCA1P38398 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.6□□□□□ -1.83
BRCA1P38398 BNIP3P7-201ENST00000605641 516 ntBASIC3.6□□□□□ -1.83
BRCA1P38398 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
BRCA1P38398 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.6□□□□□ -1.83
BRCA1P38398 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.59□□□□□ -1.83
BRCA1P38398 MIR708-201ENST00000390708 88 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
BRCA1P38398 AC105402.1-201ENST00000413336 545 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 AP000936.2-201ENST00000447151 681 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 AL627224.1-201ENST00000448334 444 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.59□□□□□ -1.83
BRCA1P38398 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.59□□□□□ -1.83
BRCA1P38398 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.59□□□□□ -1.83
BRCA1P38398 AC008549.1-201ENST00000512900 643 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.59□□□□□ -1.83
BRCA1P38398 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.59□□□□□ -1.83
BRCA1P38398 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.59□□□□□ -1.83
BRCA1P38398 AL034351.1-201ENST00000605288 668 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 AL049555.1-201ENST00000562834 1933 ntBASIC3.59□□□□□ -1.83
BRCA1P38398 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
BRCA1P38398 HSPA8P1-201ENST00000425843 1833 ntBASIC3.59□□□□□ -1.84
BRCA1P38398 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
BRCA1P38398 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 MIR30E-201ENST00000362104 92 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 RNA5SP289-201ENST00000362332 137 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 MIR887-201ENST00000401258 79 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 SRIP2-201ENST00000428470 166 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.58□□□□□ -1.84
BRCA1P38398 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.58□□□□□ -1.84
BRCA1P38398 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 DNAJC19P1-201ENST00000455312 319 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 ATG10-AS1-201ENST00000504846 648 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 AC022790.1-201ENST00000522872 204 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.58□□□□□ -1.84
BRCA1P38398 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms