Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.5□□□□□ -1.53
COL8A1P27658 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 AC006600.1-201ENST00000572529 153 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.5□□□□□ -1.53
COL8A1P27658 SNORD39.3-201ENST00000584451 71 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL355877.2-201ENST00000603670 358 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC002044.1-201ENST00000606707 158 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 AL161423.1-201ENST00000613700 262 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL365265.1-201ENST00000621045 234 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL450472.1-202ENST00000637286 180 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 AL591848.4-201ENST00000567832 3472 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
COL8A1P27658 LINC02019-201ENST00000608605 2060 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 AL359893.1-201ENST00000447628 1580 ntBASIC5.5□□□□□ -1.53
COL8A1P27658 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
COL8A1P27658 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL8A1P27658 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC5.5□□□□□ -1.53
COL8A1P27658 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC5.49□□□□□ -1.53
COL8A1P27658 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC5.49□□□□□ -1.53
COL8A1P27658 CASC19-284ENST00000642142 1868 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 NAMPTP1-201ENST00000440465 2514 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL8A1P27658 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.49□□□□□ -1.53
COL8A1P27658 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC5.49□□□□□ -1.53
COL8A1P27658 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC5.49□□□□□ -1.53
COL8A1P27658 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.49□□□□□ -1.53
COL8A1P27658 Y_RNA.277-201ENST00000364754 102 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 RFX3-203ENST00000381984 364 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 RN7SKP62-201ENST00000384539 329 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 RNU6-293P-201ENST00000411259 106 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 BX682237.1-201ENST00000415016 335 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 COX6CP10-201ENST00000416832 224 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 AL031659.1-201ENST00000447075 539 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 RPS15AP27-201ENST00000449183 343 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC005077.1-201ENST00000449226 375 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC002553.3-201ENST00000453002 341 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 SCARNA18-201ENST00000459004 134 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AP002812.1-201ENST00000495378 474 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 MTND6P8-201ENST00000503471 522 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 RNU2-10P-201ENST00000516375 211 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.49□□□□□ -1.53
COL8A1P27658 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC092375.1-201ENST00000550410 637 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC087575.1-201ENST00000585087 229 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC005332.4-201ENST00000592752 579 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC008687.2-201ENST00000597865 520 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC245517.5-201ENST00000611529 162 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AL136228.1-201ENST00000622221 319 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC025034.2-201ENST00000623264 286 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.49□□□□□ -1.53
COL8A1P27658 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.49□□□□□ -1.53
COL8A1P27658 AC055839.1-201ENST00000634467 498 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.49□□□□□ -1.53
COL8A1P27658 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 PABPC1P8-201ENST00000452851 2086 ntBASIC5.49□□□□□ -1.53
COL8A1P27658 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL8A1P27658 SAGE3P-201ENST00000619800 1635 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 AC009313.2-201ENST00000417893 1941 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 ZNF658B-201ENST00000602828 3408 ntBASIC5.48□□□□□ -1.53
COL8A1P27658 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL8A1P27658 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
COL8A1P27658 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.48□□□□□ -1.53
COL8A1P27658 MIR411-201ENST00000362239 96 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms