Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 FABP7P1-201ENST00000424004 391 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA3O43365 ATP5JP1-201ENST00000431631 322 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AL356276.2-201ENST00000435919 558 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 AC093156.1-201ENST00000440382 670 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA3O43365 CACYBPP2-201ENST00000453625 678 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RNU7-63P-201ENST00000459054 62 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RN7SL329P-201ENST00000467740 299 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC233702.1-201ENST00000482905 502 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC004453.1-201ENST00000487895 408 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 COX6B1P2-201ENST00000489624 230 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RN7SL808P-201ENST00000496066 299 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC002456.2-201ENST00000509356 380 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA3O43365 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA3O43365 SCARNA16.4-201ENST00000516956 187 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RNU6-410P-201ENST00000517006 107 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 HMGB1P40-201ENST00000525121 540 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC022690.1-201ENST00000526681 550 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 OR4P1P-201ENST00000530808 1136 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC018552.3-201ENST00000567416 561 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AC010525.2-201ENST00000590920 195 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 AL132765.2-201ENST00000610812 351 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 uc_338.12-201ENST00000616344 181 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC091046.3-201ENST00000631455 1574 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 AL445437.1-201ENST00000623157 3087 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 AC006020.1-201ENST00000420179 1854 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXA3O43365 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 OR1S2-201ENST00000302592 978 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXA3O43365 Y_RNA.166-201ENST00000363730 102 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 RNY3P13-201ENST00000365542 102 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 SNORA67-201ENST00000384423 137 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 RNA5SP339-201ENST00000390987 122 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 RNU6-332P-201ENST00000391193 108 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL162578.1-201ENST00000406202 378 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXA3O43365 RPL35AP12-201ENST00000425362 338 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 OR4F13P-201ENST00000428478 931 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 BX276092.6-201ENST00000430476 250 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC007677.1-201ENST00000445757 515 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC140076.1-201ENST00000449897 361 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 BX276092.8-201ENST00000455722 250 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 PPIAP21-201ENST00000464473 501 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC078785.3-201ENST00000476607 425 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 TMEM248P1-201ENST00000510579 951 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC079075.1-201ENST00000559543 878 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXA3O43365 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 AC037471.2-201ENST00000564941 598 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA3O43365 MIR3691-201ENST00000578066 90 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms