Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 RNU1-75P-201ENST00000347264 129 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MIR148B-201ENST00000362252 99 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 RNU6-609P-201ENST00000365459 107 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 SNORA48.5-201ENST00000391143 135 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 HMGB3P18-201ENST00000406327 590 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 XKRYP4-201ENST00000414395 483 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL049610.1-201ENST00000423374 372 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL160175.1-201ENST00000428124 247 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MTCYBP12-201ENST00000440559 1134 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC125238.1-201ENST00000448842 249 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 XKRYP5-201ENST00000449659 483 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 RPL23AP23-201ENST00000452590 471 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC114967.1-201ENST00000504890 259 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC133963.2-201ENST00000513686 578 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 HIGD1AP3-201ENST00000515857 278 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC022790.1-201ENST00000522872 204 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL389895.1-201ENST00000554127 252 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC068714.1-201ENST00000559623 800 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MIR5004-201ENST00000579078 107 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 CKS1BP3-201ENST00000600888 237 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC098483.2-201ENST00000603158 454 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC016542.1-201ENST00000608259 493 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL109620.1-201ENST00000618738 1197 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL138960.2-201ENST00000625145 535 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MIR7153-201ENST00000637758 57 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC119674.1-212ENST00000641155 993 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL645937.1-201ENST00000641739 1652 ntBASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TMX2-CTNND1H3BSU7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC138915.3-201ENST00000562908 1389 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 GNG5P1-201ENST00000255500 204 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 MIR320B1-201ENST00000390209 79 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 ATP5F1P6-201ENST00000402768 767 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 RNU2-37P-201ENST00000410695 177 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AL353678.1-201ENST00000422735 741 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 BX890604.2-201ENST00000427883 474 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 SNORA59A-201ENST00000459326 152 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 RPL27AP5-201ENST00000469428 449 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 TXNP6-201ENST00000510190 310 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC068657.1-201ENST00000520807 306 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC104027.1-201ENST00000521887 300 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC084824.5-201ENST00000612009 413 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AP004607.9-201ENST00000618202 316 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 U6.98-201ENST00000637157 84 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 AC068647.1-201ENST00000489539 2265 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 HSPA8P19-201ENST00000505359 1517 ntBASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
TMX2-CTNND1H3BSU7 MTCO1P4-201ENST00000520516 1409 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 RNU6-805P-201ENST00000365643 106 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 MIR128-1-201ENST00000384921 82 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 BX323014.1-201ENST00000412876 237 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 AL121882.1-201ENST00000422893 417 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 MTCO2P1-201ENST00000424648 477 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 VN1R42P-201ENST00000424651 344 ntBASIC3.27□□□□□ -1.89
TMX2-CTNND1H3BSU7 OSTCP5-201ENST00000425293 453 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms