Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL139286.1-201ENST00000604465 483 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC105148.1-201ENST00000604961 409 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 RNU4-89P-201ENST00000607443 133 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC006329.2-201ENST00000611491 394 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 SNRPEP3-201ENST00000338402 276 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 SNORA7.2-201ENST00000364446 145 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 RNA5SP479-201ENST00000364858 117 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 RNA5SP189-201ENST00000364920 115 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 RN7SKP263-201ENST00000411194 309 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AL356095.1-201ENST00000417217 199 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AL050321.1-201ENST00000432363 400 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 MTND2P20-201ENST00000440805 661 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC006011.1-201ENST00000442758 349 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 VN1R25P-201ENST00000443385 738 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 NPM1P49-201ENST00000448027 714 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 RPL39P6-201ENST00000448289 150 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 RPL38P1-201ENST00000460914 211 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 SETP14-201ENST00000497538 873 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AP004371.1-201ENST00000525240 214 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 MTCYBP41-201ENST00000528913 1123 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AL360157.1-201ENST00000565962 87 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 LARP7P2-201ENST00000575306 125 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC012603.1-201ENST00000606424 528 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 AP000240.1-201ENST00000609910 452 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 MIR6867-201ENST00000610636 67 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AL050303.3-201ENST00000613704 284 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC109809.1-201ENST00000619665 545 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC092650.2-201ENST00000619984 902 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 MIR7702-201ENST00000621931 59 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 U6.101-201ENST00000637707 76 ntBASIC4.23□□□□□ -1.73
VPS28Q9UK41 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS28Q9UK41 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS28Q9UK41 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 Y_RNA.408-201ENST00000383987 102 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 Y_RNA.465-201ENST00000384293 102 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL583834.1-201ENST00000406943 343 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 MIR1193-201ENST00000408109 78 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 RNU6-628P-201ENST00000410675 107 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AIMP1P1-201ENST00000418670 937 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 HSFY1P1-201ENST00000423928 1178 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 USP9YP11-201ENST00000427537 717 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL035246.1-201ENST00000433554 1255 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 RPL21P112-201ENST00000434403 463 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 HSFY6P-201ENST00000445573 403 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 RPL36AP13-201ENST00000457490 317 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 RPL7P1-201ENST00000468161 747 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 RPL7P9-201ENST00000468715 747 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC025554.1-201ENST00000505641 188 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 FTH1P9-201ENST00000513251 355 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 MTND2P32-201ENST00000521584 1038 ntBASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS28Q9UK41 AC090281.1-201ENST00000523019 276 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms