Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 MTND4P20-201ENST00000424125 869 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 KCTD9P3-201ENST00000434597 1169 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 NDUFA5P7-201ENST00000452914 242 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 RPL38P1-201ENST00000460914 211 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC010468.1-201ENST00000461022 817 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC010307.1-201ENST00000467206 836 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 RPL7P19-201ENST00000469948 618 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AP001189.2-201ENST00000527320 189 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC007424.1-203ENST00000554613 687 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC025627.2-201ENST00000576220 160 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC008687.2-201ENST00000597865 520 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AC023043.4-201ENST00000612081 449 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 MIR486-1-201ENST00000612171 68 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL359715.5-201ENST00000623431 443 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AL139811.1-201ENST00000424779 2299 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCDH9Q9HC56 AP000526.1-201ENST00000603308 1388 ntBASIC4.14□□□□□ -1.75
PCDH9Q9HC56 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RNU6-492P-201ENST00000363035 104 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 SNORA70.2-201ENST00000364506 135 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RNU1-89P-201ENST00000384592 164 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RNU6-1151P-201ENST00000384684 107 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AL590084.2-201ENST00000401481 382 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AL139098.1-201ENST00000407291 389 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RPS4XP4-201ENST00000443195 763 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 FABP3P2-201ENST00000453169 399 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RN7SL385P-201ENST00000468873 276 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC126121.1-201ENST00000482313 553 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC010342.1-201ENST00000514047 877 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC107016.1-201ENST00000550463 337 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC090888.1-201ENST00000561335 1141 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC109446.2-201ENST00000567872 497 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC138915.2-201ENST00000569776 97 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC009220.3-201ENST00000604318 586 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC121247.2-201ENST00000604776 136 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 HMGB1P50-201ENST00000605814 607 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC010857.1-201ENST00000606398 594 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 RMST_9.1-201ENST00000619945 193 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 AC007671.2-201ENST00000637344 619 ntBASIC4.13□□□□□ -1.75
PCDH9Q9HC56 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCDH9Q9HC56 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 RNA5SP322-201ENST00000363617 119 ntBASIC4.12□□□□□ -1.75
PCDH9Q9HC56 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PCDH9Q9HC56 ENSAP1-201ENST00000392855 326 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms