Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 AC105402.2-201ENST00000438503 358 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC093156.1-201ENST00000440382 670 ntBASIC5.23□□□□□ -1.57
RNF4P78317 BRK1P2-201ENST00000442875 223 ntBASIC5.23□□□□□ -1.57
RNF4P78317 PPIAP20-201ENST00000449839 135 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC006480.1-201ENST00000449887 378 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC002553.2-201ENST00000453217 340 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AL590639.1-201ENST00000456484 337 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC007547.1-201ENST00000462177 490 ntBASIC5.23□□□□□ -1.57
RNF4P78317 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 HMGB1P21-201ENST00000502313 581 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 FTH1P21-201ENST00000512179 511 ntBASIC5.23□□□□□ -1.57
RNF4P78317 TTC39CP1-201ENST00000512513 755 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 Y_RNA.691-201ENST00000516611 103 ntBASIC5.23□□□□□ -1.57
RNF4P78317 IGLV3-24-201ENST00000517477 197 ntBASIC5.23□□□□□ -1.57
RNF4P78317 NRBF2P4-201ENST00000520874 850 ntBASIC5.23□□□□□ -1.57
RNF4P78317 OR5B10P-201ENST00000532869 642 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 BNIP3P6-201ENST00000549284 499 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 SETP2-201ENST00000553886 926 ntBASIC5.23□□□□□ -1.57
RNF4P78317 PSMA3P-201ENST00000555485 635 ntBASIC5.23□□□□□ -1.57
RNF4P78317 RPL21P12-201ENST00000559810 515 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.23□□□□□ -1.57
RNF4P78317 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 SNORD95-201ENST00000579879 68 ntBASIC5.23□□□□□ -1.57
RNF4P78317 MIR4311-201ENST00000580794 100 ntBASIC5.23□□□□□ -1.57
RNF4P78317 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 AC010424.2-201ENST00000607594 443 ntBASIC5.23□□□□□ -1.57
RNF4P78317 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 MIR6864-201ENST00000617935 70 ntBASIC5.23□□□□□ -1.57
RNF4P78317 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.23□□□□□ -1.57
RNF4P78317 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.23□□□□□ -1.57
RNF4P78317 ZNF736P3Y-201ENST00000428264 1465 ntBASIC5.23□□□□□ -1.57
RNF4P78317 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.23□□□□□ -1.57
RNF4P78317 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.23□□□□□ -1.57
RNF4P78317 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
RNF4P78317 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
RNF4P78317 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
RNF4P78317 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.22□□□□□ -1.57
RNF4P78317 RNU1-136P-201ENST00000384181 164 ntBASIC5.22□□□□□ -1.57
RNF4P78317 MIR19A-201ENST00000384878 82 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AL356967.1-201ENST00000406305 431 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RN7SKP247-201ENST00000411094 308 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 METTL15P3-201ENST00000415522 1221 ntBASIC5.22□□□□□ -1.57
RNF4P78317 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AL133173.1-201ENST00000423458 397 ntBASIC5.22□□□□□ -1.57
RNF4P78317 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.22□□□□□ -1.57
RNF4P78317 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.22□□□□□ -1.57
RNF4P78317 ERLEC1P1-201ENST00000433806 578 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.22□□□□□ -1.57
RNF4P78317 SPRYD7P1-201ENST00000443861 570 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RAC1P7-201ENST00000445367 377 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AL591623.2-201ENST00000449978 222 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AL513533.1-201ENST00000453728 415 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RPL10P17-201ENST00000453852 316 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 RFPL4AP5-201ENST00000514977 504 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 RPS27AP18-201ENST00000515536 459 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RNU6-1045P-201ENST00000516321 107 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC092470.1-201ENST00000546187 132 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.22□□□□□ -1.57
RNF4P78317 AC020661.2-201ENST00000560114 134 ntBASIC5.22□□□□□ -1.57
RNF4P78317 MRPS21P7-201ENST00000566937 238 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC110743.1-201ENST00000584870 478 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC060780.2-201ENST00000589047 198 ntBASIC5.22□□□□□ -1.57
RNF4P78317 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 AP000942.4-201ENST00000604811 241 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC113139.1-201ENST00000605049 239 ntBASIC5.22□□□□□ -1.57
RNF4P78317 AC104695.2-201ENST00000605056 775 ntBASIC5.22□□□□□ -1.57
RNF4P78317 RNU6-89P-201ENST00000606519 100 ntBASIC5.22□□□□□ -1.57
RNF4P78317 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.22□□□□□ -1.57
RNF4P78317 AL031666.3-201ENST00000609320 1006 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms