Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 AL450326.2-201ENST00000421913 1962 ntBASIC4.8□□□□□ -1.64
MSX2P35548 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX2P35548 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX2P35548 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 GNG5P1-201ENST00000255500 204 ntBASIC4.79□□□□□ -1.64
MSX2P35548 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
MSX2P35548 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
MSX2P35548 AL592291.1-201ENST00000403830 352 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RNA5SP487-201ENST00000410186 122 ntBASIC4.79□□□□□ -1.64
MSX2P35548 MTND3P17-201ENST00000416968 344 ntBASIC4.79□□□□□ -1.64
MSX2P35548 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX2P35548 SNRPEP10-201ENST00000420249 274 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX2P35548 RPL31P35-201ENST00000431058 377 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AL390119.1-201ENST00000440329 312 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX2P35548 AC239809.1-201ENST00000450470 217 ntBASIC4.79□□□□□ -1.64
MSX2P35548 EIF4A1P11-201ENST00000451239 222 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX2P35548 AL691482.1-201ENST00000453255 87 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX2P35548 AC099563.1-201ENST00000456086 418 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RPS15AP1-201ENST00000457423 391 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RNU7-136P-201ENST00000458819 69 ntBASIC4.79□□□□□ -1.64
MSX2P35548 PPIAP21-201ENST00000464473 501 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 PPIAP19-201ENST00000486414 492 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RN7SL346P-201ENST00000491561 294 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC114967.1-201ENST00000504890 259 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC117522.3-201ENST00000507974 584 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX2P35548 RN7SKP46-201ENST00000515942 234 ntBASIC4.79□□□□□ -1.64
MSX2P35548 SNORD46.2-201ENST00000516021 102 ntBASIC4.79□□□□□ -1.64
MSX2P35548 Y_RNA.675-201ENST00000516389 149 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RNA5SP271-201ENST00000516700 88 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RNU6-1003P-201ENST00000517099 105 ntBASIC4.79□□□□□ -1.64
MSX2P35548 CYCSP22-201ENST00000517555 339 ntBASIC4.79□□□□□ -1.64
MSX2P35548 NRBF2P4-201ENST00000520874 850 ntBASIC4.79□□□□□ -1.64
MSX2P35548 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.79□□□□□ -1.64
MSX2P35548 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
MSX2P35548 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 RPL10P14-201ENST00000565265 298 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX2P35548 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX2P35548 MIR4795-201ENST00000584182 89 ntBASIC4.79□□□□□ -1.64
MSX2P35548 TPMTP1-201ENST00000592307 737 ntBASIC4.79□□□□□ -1.64
MSX2P35548 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 AP001429.1-201ENST00000602568 530 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC012507.3-201ENST00000603556 477 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AL359999.1-201ENST00000604513 294 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC109309.2-201ENST00000612597 332 ntBASIC4.79□□□□□ -1.64
MSX2P35548 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.79□□□□□ -1.64
MSX2P35548 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX2P35548 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 CASC19-204ENST00000641001 2055 ntBASIC4.79□□□□□ -1.64
MSX2P35548 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX2P35548 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSX2P35548 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 NEAT1-202ENST00000501122 22743 ntBASIC4.78□□□□□ -1.64
MSX2P35548 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX2P35548 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
MSX2P35548 MIR323A-201ENST00000362199 86 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RNA5SP46-201ENST00000362370 120 ntBASIC4.78□□□□□ -1.64
MSX2P35548 U3.3-201ENST00000362986 216 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RNU6-289P-201ENST00000364093 107 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RNU6-692P-201ENST00000384496 107 ntBASIC4.78□□□□□ -1.64
MSX2P35548 HMGB1P17-201ENST00000403495 628 ntBASIC4.78□□□□□ -1.64
MSX2P35548 FAT1P1-201ENST00000406588 507 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.78□□□□□ -1.64
MSX2P35548 RN7SKP286-201ENST00000410894 299 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RN7SKP247-201ENST00000411094 308 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC016769.2-201ENST00000414815 475 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AC093155.2-201ENST00000420734 937 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RAD23BP1-201ENST00000421404 1227 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 EI24P4-201ENST00000423683 1078 ntBASIC4.78□□□□□ -1.64
MSX2P35548 CHEK2P5-201ENST00000423877 246 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RPL12P34-201ENST00000424532 479 ntBASIC4.78□□□□□ -1.64
MSX2P35548 CKS1BP6-201ENST00000424932 240 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC133104.1-201ENST00000429100 218 ntBASIC4.78□□□□□ -1.64
MSX2P35548 OR52B5P-201ENST00000435337 951 ntBASIC4.78□□□□□ -1.64
MSX2P35548 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 RPL17P49-201ENST00000443728 411 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC004980.3-201ENST00000447046 365 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms