Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.44□□□□□ -1.7
HOXA3O43365 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA3O43365 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 RPL23P2-201ENST00000320371 421 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RNA5SP183-201ENST00000362452 119 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RNU1-146P-201ENST00000364015 165 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RNU6-74P-201ENST00000384235 107 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 Y_RNA.548-201ENST00000384656 105 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA3O43365 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA3O43365 ARL4AP5-201ENST00000404372 599 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 FAT1P1-201ENST00000406588 507 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RPSAP35-201ENST00000413753 818 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 METTL15P3-201ENST00000415522 1221 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC009302.1-201ENST00000417147 390 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 TMEM183AP1-205ENST00000432739 290 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 TIMM9P1-201ENST00000436122 256 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 TAAR7P-201ENST00000436141 242 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC105399.1-202ENST00000447303 205 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC104308.1-201ENST00000454621 333 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC021660.1-201ENST00000465006 554 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RPS4XP10-201ENST00000465034 731 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RN7SL222P-201ENST00000476452 299 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RN7SL826P-201ENST00000479724 288 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 RPSAP50-201ENST00000481955 852 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC093278.1-201ENST00000494700 600 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC016065.2-201ENST00000514530 444 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 SNORD60.2-201ENST00000516883 86 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 AP006245.2-201ENST00000522004 300 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 OR5B19P-201ENST00000531766 928 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA3O43365 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC019322.1-201ENST00000571869 389 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA3O43365 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC078795.3-201ENST00000602913 472 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC025588.3-201ENST00000604182 274 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC005034.5-201ENST00000604219 466 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 NANOGP3-201ENST00000605855 286 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC126915.2-201ENST00000610957 190 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 AL442067.2-201ENST00000614033 363 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 FRG1KP-201ENST00000623592 341 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC112204.3-201ENST00000623822 332 ntBASIC4.43□□□□□ -1.7
HOXA3O43365 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA3O43365 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA3O43365 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA3O43365 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA3O43365 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA3O43365 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA3O43365 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 NACAP2-201ENST00000318548 624 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA3O43365 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HOXA3O43365 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HOXA3O43365 RPL11P3-201ENST00000395256 523 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AL645927.1-201ENST00000396783 406 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AL049697.2-201ENST00000403708 294 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AL356432.1-201ENST00000405809 419 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RNU2-15P-201ENST00000410692 191 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RN7SKP213-201ENST00000410746 298 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 RPL23AP27-201ENST00000415161 451 ntBASIC4.42□□□□□ -1.7
HOXA3O43365 AC069213.2-201ENST00000420238 366 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms