Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL713922.2-201ENST00000619384 716 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 RMST_9.1-201ENST00000619945 193 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC068831.8-201ENST00000620171 435 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC103858.2-201ENST00000621471 543 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 CR381572.1-201ENST00000625098 102 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 MTCO1P23-201ENST00000415223 1526 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNU6-989P-201ENST00000362756 107 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNU4-92P-201ENST00000363783 136 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNU6-636P-201ENST00000384598 107 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNU6-821P-201ENST00000390995 107 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 ARF4P3-201ENST00000397387 509 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNA5SP80-201ENST00000410475 111 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNA5SP306-201ENST00000411087 107 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 MRPS18BP2-201ENST00000434310 759 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RPS20P24-201ENST00000457473 361 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC108941.1-201ENST00000502853 530 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC005921.1-201ENST00000510589 286 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 VWA8P1-201ENST00000510889 176 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 SLC2A13P1-201ENST00000531560 322 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC063950.1-201ENST00000552036 308 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC112484.5-201ENST00000624189 228 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC090897.3-201ENST00000636973 1157 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 MTND2P41-201ENST00000637599 773 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 AC116667.1-201ENST00000604855 2072 ntBASIC4.25□□□□□ -1.73
VPS28Q9UK41 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS28Q9UK41 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS28Q9UK41 SPRR2C-201ENST00000290702 219 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 OR11H4-201ENST00000315409 1082 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 RNA5SP130-201ENST00000364431 114 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 RNU1-13P-201ENST00000384499 162 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 SNRPEP2-201ENST00000397592 279 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AL450338.1-201ENST00000407987 512 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 MTND2P5-201ENST00000432656 1006 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 OR4C10P-201ENST00000434991 931 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC092427.1-201ENST00000439177 601 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 RPL23AP89-201ENST00000439324 255 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AL606517.1-201ENST00000446914 387 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 SLC31A1P1-201ENST00000451221 567 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 HMGB3P22-202ENST00000451823 572 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 RN7SKP21-201ENST00000516503 220 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AP004242.1-201ENST00000533701 349 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC007424.1-203ENST00000554613 687 ntBASIC4.24□□□□□ -1.73
VPS28Q9UK41 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS28Q9UK41 BNIP3P24-201ENST00000593398 557 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms