Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 COX6B1P2-201ENST00000489624 230 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RBBP4P6-201ENST00000508098 202 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC104136.1-201ENST00000512969 394 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC130365.2-201ENST00000525882 1201 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AP000827.1-201ENST00000527814 258 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC079600.1-201ENST00000550326 297 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC005899.2-201ENST00000584353 90 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC005357.1-201ENST00000588399 301 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AL670379.4-201ENST00000605279 254 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AL354718.1-201ENST00000619764 589 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC079776.5-201ENST00000641920 211 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC007529.1-201ENST00000418574 2178 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 SHQ1P1-201ENST00000437111 1544 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 CDC27P3-201ENST00000635418 1910 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RNU1-134P-201ENST00000362935 165 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RNU6-946P-201ENST00000383878 107 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.404-201ENST00000383978 102 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.496-201ENST00000384444 101 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 MIR1178-201ENST00000408396 91 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RNU6-293P-201ENST00000411259 106 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC080125.1-201ENST00000414888 684 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 snoU109.4-201ENST00000458953 143 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC006539.1-201ENST00000481419 501 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RN7SL714P-201ENST00000487050 298 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC021146.3-201ENST00000511911 260 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.668-201ENST00000516233 93 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 CYCSP27-201ENST00000527643 293 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 STX3-204ENST00000530221 534 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RPA2P1-201ENST00000556557 721 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 MIR4489-201ENST00000578869 62 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC104695.3-201ENST00000604052 296 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC062037.2-201ENST00000610137 73 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RN7SL787P-201ENST00000613000 284 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 CYP4F35P-202ENST00000636121 390 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AL732372.2-225ENST00000642124 456 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIMD1Q9UGP4 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.56□□□□□ -1.36
LIMD1Q9UGP4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms