Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU4-71P-201ENST00000516258 113 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 SNORA72.7-201ENST00000516349 94 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AC073410.2-201ENST00000603240 332 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AL138726.1-201ENST00000614873 333 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 TCL6_3.1-201ENST00000619064 137 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 AC096921.2-201ENST00000561507 1916 ntBASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NPAS3Q8IXF0 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 WBP11P1-201ENST00000562560 1931 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AP002833.3-201ENST00000625075 2265 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AL049634.1-201ENST00000453770 1720 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 Y_RNA.2-201ENST00000362330 96 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 Y_RNA.126-201ENST00000363382 111 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RN7SKP160-201ENST00000363804 340 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RNY1-201ENST00000364228 113 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RNA5SP132-201ENST00000364725 118 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RNU6-39P-201ENST00000384344 107 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 COX6CP10-201ENST00000416832 224 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC068533.1-201ENST00000418542 415 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 SNAP23P1-201ENST00000433229 246 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC012075.1-201ENST00000436549 580 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RPL29P29-201ENST00000448725 423 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 SNRPFP3-201ENST00000457792 225 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC105758.1-201ENST00000506038 399 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RNU6-479P-201ENST00000516348 105 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 RNU1-54P-201ENST00000517181 120 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 AC012669.1-201ENST00000603209 283 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NPAS3Q8IXF0 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 SNORA64.1-201ENST00000362600 132 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU6-562P-201ENST00000362731 107 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 Y_RNA.83-201ENST00000363005 113 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 SNORD50.2-201ENST00000365465 70 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU6-1029P-201ENST00000384109 107 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 HMGB1P20-201ENST00000402555 677 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU2-33P-201ENST00000410344 192 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU2-29P-201ENST00000410423 189 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 AL139156.1-201ENST00000412785 841 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 NMD3P2-201ENST00000421815 761 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 MTATP6P16-201ENST00000434543 526 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 AC079922.1-201ENST00000443291 359 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 MTCO3P8-201ENST00000453691 755 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU7-182P-201ENST00000459009 62 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU7-120P-201ENST00000459334 63 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RN7SL466P-201ENST00000497546 295 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 TXNP6-201ENST00000510190 310 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 RNU6-861P-201ENST00000516745 106 ntBASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.22□□□□□ -1.41
NPAS3Q8IXF0 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms