Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
RFX4Q33E94 NUTF2P7-201ENST00000453086 375 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 RN7SL132P-201ENST00000478131 296 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC108078.3-201ENST00000502633 489 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RFX4Q33E94 HMGB3P15-201ENST00000507326 574 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC112518.2-201ENST00000508565 425 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.22□□□□□ -1.89
RFX4Q33E94 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.22□□□□□ -1.89
RFX4Q33E94 RNA5SP380-201ENST00000517190 98 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC010306.1-201ENST00000523223 1117 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AP003717.3-201ENST00000544832 1180 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.22□□□□□ -1.89
RFX4Q33E94 TRAV37-201ENST00000553906 342 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 CENPUP2-201ENST00000555897 1186 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.22□□□□□ -1.89
RFX4Q33E94 ATP5F1P7-201ENST00000567330 760 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 RN7SL703P-201ENST00000578485 302 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC011468.4-201ENST00000603942 409 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC069209.1-201ENST00000619282 651 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 RNU6-156P-201ENST00000621869 107 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 SNORA50A-202ENST00000629536 136 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.22□□□□□ -1.89
RFX4Q33E94 AC132825.7-201ENST00000638744 335 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RFX4Q33E94 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RFX4Q33E94 MTND5P27-201ENST00000428871 1720 ntBASIC3.22□□□□□ -1.89
RFX4Q33E94 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
RFX4Q33E94 RPL32P23-201ENST00000397237 405 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 HNRNPDP2-201ENST00000406475 478 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 RN7SKP53-201ENST00000411337 315 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AL356968.1-201ENST00000416622 474 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 HMGB1P45-201ENST00000435986 653 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 SETP5-201ENST00000437270 562 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 AC006994.1-201ENST00000438212 839 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 GAPDHP36-201ENST00000480688 918 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 RPL31P13-201ENST00000484151 370 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AC093267.1-201ENST00000489176 961 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 RANP9-201ENST00000519957 271 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 AC245166.1-201ENST00000521012 253 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 MTND1P36-201ENST00000522384 936 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 OR8L1P-201ENST00000534005 955 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.21□□□□□ -1.9
RFX4Q33E94 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.21□□□□□ -1.9
RFX4Q33E94 MIR4697-201ENST00000582977 78 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 AC090912.3-201ENST00000609775 533 ntBASIC3.21□□□□□ -1.9
RFX4Q33E94 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
RFX4Q33E94 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.2□□□□□ -1.9
RFX4Q33E94 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.2□□□□□ -1.9
RFX4Q33E94 OR4A15-201ENST00000314706 1035 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 MIR148B-201ENST00000362252 99 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 RNU6-1339P-201ENST00000363574 91 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RFX4Q33E94 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
RFX4Q33E94 SNORD65C-201ENST00000390962 71 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 AP000567.1-201ENST00000406413 156 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 RN7SKP156-201ENST00000410308 342 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.2□□□□□ -1.9
RFX4Q33E94 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.2□□□□□ -1.9
RFX4Q33E94 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.2□□□□□ -1.9
RFX4Q33E94 MTND2P16-201ENST00000419987 799 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 AC241520.1-201ENST00000422654 1099 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.2□□□□□ -1.9
RFX4Q33E94 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.2□□□□□ -1.9
RFX4Q33E94 RPS29P7-201ENST00000439662 171 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.2□□□□□ -1.9
RFX4Q33E94 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.2□□□□□ -1.9
RFX4Q33E94 GXYLT1P1-201ENST00000446657 490 ntBASIC3.2□□□□□ -1.9
RFX4Q33E94 AL096803.2-201ENST00000450032 677 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms