Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SOX4Q06945 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 AC012618.3-205ENST00000637896 1496 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 CASC19-204ENST00000641001 2055 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 RNU6-853P-201ENST00000364306 107 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 Y_RNA.231-201ENST00000364358 102 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 RNU6-996P-201ENST00000365438 107 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 MIR105-1-201ENST00000385222 81 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AL645927.1-201ENST00000396783 406 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 HSPE1P1-201ENST00000421494 318 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 NUP35P1-201ENST00000422734 947 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 NPM1P18-201ENST00000434232 732 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 RPS26P40-201ENST00000435209 294 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 RPL36AP15-201ENST00000444514 266 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AL035551.1-201ENST00000446931 348 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 HMGN3P1-201ENST00000453847 193 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AL356010.1-201ENST00000456364 102 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC009127.1-201ENST00000467090 155 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 SNRPCP3-201ENST00000474888 476 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 RN7SL826P-201ENST00000479724 288 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC012123.2-201ENST00000485809 248 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC004453.1-201ENST00000487895 408 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 RNU6-488P-201ENST00000515918 99 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 SNORA25.17-201ENST00000517184 124 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX4Q06945 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX4Q06945 HMGN2P6-201ENST00000551091 273 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 AC098848.2-201ENST00000588023 330 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX4Q06945 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 7SK.7-201ENST00000603504 247 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC010680.4-201ENST00000605334 543 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AL139124.1-201ENST00000609123 421 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AL121612.2-201ENST00000612261 482 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 AC000095.2-202ENST00000637415 154 ntBASIC5.72□□□□□ -1.49
SOX4Q06945 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX4Q06945 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SOX4Q06945 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX4Q06945 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX4Q06945 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
SOX4Q06945 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.71□□□□□ -1.49
SOX4Q06945 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.71□□□□□ -1.49
SOX4Q06945 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
SOX4Q06945 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 RN7SKP185-201ENST00000362813 326 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 SNORA74A-201ENST00000364089 198 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 RNU6-343P-201ENST00000364709 104 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 RNU6-1318P-201ENST00000365389 103 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 Y_RNA.395-201ENST00000383945 109 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 AL031679.1-201ENST00000400616 525 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 U3.36-201ENST00000408418 213 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 RN7SKP58-201ENST00000411010 305 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 EI24P4-201ENST00000423683 1078 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX4Q06945 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX4Q06945 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX4Q06945 RPL23AP15-201ENST00000450202 459 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 RBMY2TP-201ENST00000451162 947 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 MTND3P16-201ENST00000452205 344 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX4Q06945 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX4Q06945 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX4Q06945 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX4Q06945 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 Y_RNA.720-201ENST00000517166 92 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX4Q06945 OR4T1P-201ENST00000554933 911 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms