Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL18A1P39060 RPL23AP22-201ENST00000437556 453 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 RN7SL330P-201ENST00000469709 307 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 RN7SL633P-201ENST00000488974 297 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 RNA5SP320-201ENST00000516263 124 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 AC243972.3-201ENST00000539655 198 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 AC010733.2-201ENST00000589496 5702 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL18A1P39060 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.65□□□□□ -1.83
COL18A1P39060 AC093775.1-201ENST00000624154 1868 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 TAB3P1-202ENST00000452645 1634 ntBASIC3.65□□□□□ -1.83
COL18A1P39060 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
COL18A1P39060 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL18A1P39060 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.65□□□□□ -1.83
COL18A1P39060 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.65□□□□□ -1.83
COL18A1P39060 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL18A1P39060 AL590639.1-201ENST00000456484 337 ntBASIC3.64□□□□□ -1.83
COL18A1P39060 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.64□□□□□ -1.83
COL18A1P39060 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.64□□□□□ -1.83
COL18A1P39060 AL592295.2-201ENST00000612578 206 ntBASIC3.64□□□□□ -1.83
COL18A1P39060 AP003072.5-201ENST00000623872 773 ntBASIC3.64□□□□□ -1.83
COL18A1P39060 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.64□□□□□ -1.83
COL18A1P39060 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL18A1P39060 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL18A1P39060 RNA5SP274-201ENST00000410484 108 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 AP000936.3-201ENST00000438127 255 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
COL18A1P39060 CYCSP20-201ENST00000473154 315 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 RPS6P4-201ENST00000494693 758 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.63□□□□□ -1.83
COL18A1P39060 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
COL18A1P39060 SNORA64.4-201ENST00000516632 81 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.63□□□□□ -1.83
COL18A1P39060 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL18A1P39060 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.63□□□□□ -1.83
COL18A1P39060 SNORA68.2-201ENST00000391263 128 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 AC105402.1-201ENST00000413336 545 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 MTND4LP21-201ENST00000415303 295 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 AL365396.1-201ENST00000430854 671 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 VN1R96P-201ENST00000446052 858 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 AC006539.3-201ENST00000454258 129 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 AC239798.3-201ENST00000454459 408 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.63□□□□□ -1.83
COL18A1P39060 ANXA2P1-201ENST00000505539 926 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 RNU6-943P-201ENST00000516960 98 ntBASIC3.63□□□□□ -1.83
COL18A1P39060 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
COL18A1P39060 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.62□□□□□ -1.83
COL18A1P39060 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL18A1P39060 SPATA2P1-201ENST00000431223 2055 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL18A1P39060 AC233981.1-201ENST00000423224 461 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 MTCO1P51-201ENST00000427672 1060 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 AC112220.1-201ENST00000434628 355 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 AC002553.2-201ENST00000453217 340 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 AC008413.1-201ENST00000511864 177 ntBASIC3.62□□□□□ -1.83
COL18A1P39060 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.62□□□□□ -1.83
COL18A1P39060 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.62□□□□□ -1.83
COL18A1P39060 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL18A1P39060 MIR512-1-201ENST00000384913 84 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL18A1P39060 OR6C64P-201ENST00000419708 825 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.61□□□□□ -1.83
COL18A1P39060 RPS29P6-201ENST00000438196 145 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AL513043.1-201ENST00000439124 535 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.61□□□□□ -1.83
COL18A1P39060 RN7SKP43-201ENST00000516173 320 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.61□□□□□ -1.83
COL18A1P39060 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.61□□□□□ -1.83
COL18A1P39060 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.61□□□□□ -1.83
COL18A1P39060 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.61□□□□□ -1.83
COL18A1P39060 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL18A1P39060 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
COL18A1P39060 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
COL18A1P39060 AL606537.1-201ENST00000607258 2011 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
COL18A1P39060 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.61□□□□□ -1.83
COL18A1P39060 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL18A1P39060 RPL31P1-201ENST00000398116 372 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 RN7SKP223-201ENST00000410582 62 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AC244033.1-201ENST00000426826 870 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
COL18A1P39060 SNRPFP2-201ENST00000440710 251 ntBASIC3.61□□□□□ -1.83
COL18A1P39060 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.61□□□□□ -1.83
COL18A1P39060 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.61□□□□□ -1.83
COL18A1P39060 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.61□□□□□ -1.83
COL18A1P39060 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.61□□□□□ -1.83
COL18A1P39060 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.61□□□□□ -1.83
COL18A1P39060 AC107081.3-201ENST00000612715 2034 ntBASIC3.6□□□□□ -1.83
COL18A1P39060 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
COL18A1P39060 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL18A1P39060 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.6□□□□□ -1.83
COL18A1P39060 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
COL18A1P39060 RNU4-44P-201ENST00000363050 141 ntBASIC3.6□□□□□ -1.83
COL18A1P39060 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms